LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p

ENST00000501122

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Gene
miRNA
Score
DIANA Links
NEAT1
hsa-miR-148b-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8173-8198
0.009
2
8mer
10596-10621
0.007
2
7mer
4954-4974
0.006
1
8mer+mismatch
529-551
0.006
2
7mer
2375-2391
0.004
2
6mer
3628-3647
0.004
5
7mer
15678-15684
0.003
0
7mer
18079-18095
0.003
0
6mer
6906-6921
0.002
1
6mer
253-271
0.002
1
6mer
15325-15350
0.002
0
6mer
13663-13680
0.002
1
6mer
5439-5463
0.002
1
6mer
1986-2012
0.002
0
6mer
17406-17419
0.002
1
6mer
5881-5902
0.001
0
6mer
11691-11711
0.001
1
6mer
6968-6987
0.001
Not Conserved
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