LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_010806
hsa-miR-148b-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022970
Biotype: transcript isomorph
Gene id: XLOC_010806
Gene Name: XLOC_010806
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-89
0.039
8
6mer
212-235
0.005
2
XLOC_007753
hsa-miR-148b-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016378
Biotype: transcript isomorph
Gene id: XLOC_007753
Gene Name: XLOC_007753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
428-447
0.044
1
AC015849.16
hsa-miR-148b-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000604907
Biotype: lincRNA
Gene id: ENSG00000270977
Gene Name: AC015849.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
150-172
0.018
1
7mer
4542-4562
0.005
0
6mer
5390-5406
0.005
1
6mer
516-540
0.003
1
7mer
3260-3285
0.003
0
6mer
677-693
0.003
1
6mer
3981-4006
0.002
2
6mer
4160-4177
0.002
0
6mer
1234-1255
0.002
0
XLOC_004049
hsa-miR-148b-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00009107
Biotype: transcript isomorph
Gene id: XLOC_004049
Gene Name: XLOC_004049
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
570-584
0.029
0
6mer
640-660
0.006
1
6mer
678-695
0.005
1
6mer
585-605
0.004
1
RP11-58A18.2
hsa-miR-148b-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000621177
Biotype: lincRNA
Gene id: ENSG00000274478
Gene Name: RP11-58A18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
387-404
0.043
1
XLOC_001515
hsa-miR-148b-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002929
Biotype: transcript isomorph
Gene id: XLOC_001515
Gene Name: XLOC_001515
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
427-450
0.043
6
CTD-2378E12.1
hsa-miR-148b-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000619889
Biotype: lincRNA
Gene id: ENSG00000273674
Gene Name: CTD-2378E12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
487-497
0.026
1
9mer
389-404
0.017
Not Conserved
XLOC_005957
hsa-miR-148b-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013289
Biotype: transcript isomorph
Gene id: XLOC_005957
Gene Name: XLOC_005957
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
440-452
0.022
0
8mer
382-394
0.014
Not Conserved
6mer
366-382
0.004
Not Conserved
6mer
424-440
0.003
Not Conserved
MUC19
hsa-miR-148b-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000423284
Biotype: retained_intron
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
510-525
0.037
1
6mer
501-517
0.006
0
XLOC_001265
hsa-miR-148b-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001882
Biotype: transcript isomorph
Gene id: XLOC_001265
Gene Name: XLOC_001265
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7121-7145
0.015
Not Conserved
7mer
1321-1344
0.005
0
6mer
7676-7690
0.004
1
6mer
7933-7956
0.004
1
6mer
3328-3349
0.003
6
7mer
3716-3735
0.003
1
7mer
7004-7021
0.003
1
6mer
4029-4040
0.002
1
6mer
6592-6605
0.002
1
6mer
1630-1643
0.001
1
6mer
1624-1643
0.000
1
XLOC_000076
hsa-miR-148b-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000855
Biotype: transcript isomorph
Gene id: XLOC_000076
Gene Name: XLOC_000076
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2317-2333
0.022
Not Conserved
8mer
2301-2325
0.018
1
7mer
524-540
0.003
1
RP11-138H8.6
hsa-miR-148b-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557800
Biotype: sense_intronic
Gene id: ENSG00000259744
Gene Name: RP11-138H8.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
398-416
0.043
1
RP11-159D12.2
hsa-miR-148b-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577267
Biotype: lincRNA
Gene id: ENSG00000264112
Gene Name: RP11-159D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
317-336
0.025
5
7mer
3989-4016
0.010
1
6mer
858-876
0.004
5
6mer
2459-2475
0.003
4
KB-1507C5.2
hsa-miR-148b-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517389
Biotype: antisense
Gene id: ENSG00000253320
Gene Name: KB-1507C5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-85
0.040
0
6mer
48-62
0.003
0
RP11-664I21.5
hsa-miR-148b-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524453
Biotype: antisense
Gene id: ENSG00000254568
Gene Name: RP11-664I21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
506-527
0.043
4
RP11-286O18.1
hsa-miR-148b-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555966
Biotype: antisense
Gene id: ENSG00000258843
Gene Name: RP11-286O18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-289
0.027
0
7mer
356-372
0.016
3
AC072062.1
hsa-miR-148b-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607412
Biotype: antisense
Gene id: ENSG00000229267
Gene Name: AC072062.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1203-1224
0.017
1
7mer
1622-1645
0.010
0
6mer
316-329
0.007
1
7mer
1110-1125
0.006
2
6mer
1314-1334
0.003
1
TTN-AS1
hsa-miR-148b-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589434
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
987-1013
0.043
6
RP11-119F7.5
hsa-miR-148b-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000562082
Biotype: sense_overlapping
Gene id: ENSG00000260400
Gene Name: RP11-119F7.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2238-2254
0.043
8
XLOC_009990
hsa-miR-148b-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020685
Biotype: transcript isomorph
Gene id: XLOC_009990
Gene Name: XLOC_009990
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
803-811
0.038
1
7mer
683-709
0.005
1
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