LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_011213
hsa-miR-148b-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023356
Biotype: transcript isomorph
Gene id: XLOC_011213
Gene Name: XLOC_011213
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2268-2287
0.026
3
7mer
90-113
0.014
1
6mer
2520-2541
0.006
2
RP11-9G1.3
hsa-miR-148b-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506897
Biotype: lincRNA
Gene id: ENSG00000250241
Gene Name: RP11-9G1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
239-256
0.035
1
7mer
35-53
0.011
1
RP11-264B17.3
hsa-miR-148b-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569969
Biotype: retained_intron
Gene id: ENSG00000261067
Gene Name: RP11-264B17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5268-5295
0.045
3
RP13-653N12.1
hsa-miR-148b-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536341
Biotype: lincRNA
Gene id: ENSG00000256551
Gene Name: RP13-653N12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
244-263
0.022
1
7mer
437-449
0.012
1
6mer
474-496
0.011
1
RP11-483P21.2
hsa-miR-148b-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561599
Biotype: antisense
Gene id: ENSG00000260228
Gene Name: RP11-483P21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
399-424
0.025
0
7mer
71-76
0.016
1
6mer
408-424
0.004
1
LOC550113
hsa-miR-148b-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_046116.1
Biotype: antisense
Gene id: NR_046116.1 (gene)
Gene Name: LOC550113
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2552-2559
0.024
2
7mer
1829-1849
0.006
0
7mer
863-876
0.006
1
7mer
801-812
0.005
1
6mer
1308-1331
0.003
0
6mer
895-912
0.002
1
AC005932.1
hsa-miR-148b-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601106
Biotype: antisense
Gene id: ENSG00000269019
Gene Name: AC005932.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
935-954
0.031
1
6mer
210-226
0.007
5
8mer
254-268
0.007
2
RP11-744K17.1
hsa-miR-148b-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000562182
Biotype: lincRNA
Gene id: ENSG00000261020
Gene Name: RP11-744K17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2086-2105
0.013
1
8mer
1422-1447
0.010
1
6mer
4487-4506
0.009
1
6mer
566-584
0.006
1
6mer
2913-2930
0.003
1
6mer
1879-1897
0.003
0
XLOC_012679
hsa-miR-148b-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026332
Biotype: transcript isomorph
Gene id: XLOC_012679
Gene Name: XLOC_012679
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
786-806
0.019
0
7mer
1323-1339
0.013
1
7mer
1027-1047
0.009
1
6mer
448-465
0.005
1
RP11-219J21.2
hsa-miR-148b-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522524
Biotype: lincRNA
Gene id: ENSG00000253342
Gene Name: RP11-219J21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-189
0.030
0
6mer
422-432
0.014
1
XLOC_005753
hsa-miR-148b-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012196
Biotype: transcript isomorph
Gene id: XLOC_005753
Gene Name: XLOC_005753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3826-3849
0.014
0
7mer
688-703
0.010
1
7mer
4255-4274
0.009
Not Conserved
6mer
638-661
0.003
1
6mer
1933-1956
0.003
3
6mer
1218-1226
0.003
1
6mer
2453-2468
0.002
1
AC079612.2
hsa-miR-148b-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446029
Biotype: lincRNA
Gene id: ENSG00000227459
Gene Name: AC079612.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
325-341
0.044
Not Conserved
RP11-214L13.1
hsa-miR-148b-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000563553
Biotype: lincRNA
Gene id: ENSG00000260930
Gene Name: RP11-214L13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1452-1468
0.014
3
6mer
38-61
0.011
1
6mer
98-118
0.007
0
7mer
1254-1270
0.006
1
6mer
1884-1910
0.004
1
6mer
1512-1522
0.003
1
LINC00624
hsa-miR-148b-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000621316
Biotype: antisense
Gene id: ENSG00000278811
Gene Name: LINC00624
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
807-826
0.024
2
8mer
665-678
0.014
3
6mer
1942-1963
0.002
1
LINC00326
hsa-miR-148b-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000457339
Biotype: lincRNA
Gene id: ENSG00000231023
Gene Name: LINC00326
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
373-387
0.021
1
7mer
13-30
0.007
1
7mer
798-810
0.007
0
7mer
87-100
0.005
1
6mer
1636-1655
0.004
1
P4HA2-AS1
hsa-miR-148b-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_047470.1
Biotype: antisense
Gene id: NR_047470.1 (gene)
Gene Name: P4HA2-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
722-734
0.044
8
RP4-734G22.3
hsa-miR-148b-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606802
Biotype: antisense
Gene id: ENSG00000272078
Gene Name: RP4-734G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7690-7707
0.021
12
8mer
562-582
0.017
10
6mer
615-635
0.003
8
6mer
1913-1926
0.001
1
6mer
6233-6240
0.001
0
LINC00442
hsa-miR-148b-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000428086
Biotype: antisense
Gene id: ENSG00000232685
Gene Name: LINC00442
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
524-537
0.016
1
7mer
447-462
0.015
1
7mer
372-387
0.013
0
XLOC_005466
hsa-miR-148b-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011192
Biotype: transcript isomorph
Gene id: XLOC_005466
Gene Name: XLOC_005466
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
373-387
0.021
1
7mer
13-30
0.007
1
7mer
798-810
0.007
0
7mer
87-100
0.005
1
6mer
1636-1655
0.003
1
P4HA2-AS1
hsa-miR-148b-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000417667
Biotype: antisense
Gene id: ENSG00000237714
Gene Name: P4HA2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
722-734
0.044
8
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