LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
RP5-1021I20.2
hsa-miR-148b-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555539
Biotype: lincRNA
Gene id: ENSG00000258586
Gene Name: RP5-1021I20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
887-902
0.048
2
RP11-493L12.3
hsa-miR-148b-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547748
Biotype: antisense
Gene id: ENSG00000257925
Gene Name: RP11-493L12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
469-485
0.036
1
6mer
381-404
0.006
2
6mer
637-655
0.005
1
XLOC_002791
hsa-miR-148b-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006193
Biotype: transcript isomorph
Gene id: XLOC_002791
Gene Name: XLOC_002791
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1297-1321
0.040
3
6mer
23-41
0.007
2
LINC00933
hsa-miR-148b-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_038274.1
Biotype: lincRNA
Gene id: NR_038274.1 (gene)
Gene Name: LINC00933
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2593-2610
0.015
1
8mer
523-548
0.015
1
7mer
205-220
0.007
0
6mer
2075-2088
0.004
0
6mer
329-346
0.003
Not Conserved
6mer
713-736
0.003
1
RP11-104J23.1
hsa-miR-148b-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000617328
Biotype: antisense
Gene id: ENSG00000275944
Gene Name: RP11-104J23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
668-693
0.021
0
8mer
750-765
0.019
0
XLOC_008618
hsa-miR-148b-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017678
Biotype: transcript isomorph
Gene id: XLOC_008618
Gene Name: XLOC_008618
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-249
0.019
1
8mer
2370-2382
0.017
0
6mer
2999-3017
0.004
2
6mer
817-843
0.003
1
7mer
1092-1107
0.003
0
6mer
828-850
0.002
1
LINC01347
hsa-miR-148b-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435793
Biotype: retained_intron
Gene id: ENSG00000214837
Gene Name: LINC01347
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-24
0.047
0
RP11-344E13.3
hsa-miR-148b-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582583
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1306-1329
0.026
0
7mer
1636-1659
0.012
Not Conserved
6mer
357-379
0.005
0
7mer
401-417
0.004
0
RP1-309I22.2
hsa-miR-148b-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5111-5132
0.007
0
8mer
27093-27118
0.007
2
6mer
52-77
0.005
1
6mer
28235-28256
0.004
6
7mer
22010-22034
0.004
1
6mer
28287-28300
0.003
6
7mer
16116-16140
0.002
2
6mer
16829-16854
0.002
4
6mer
19208-19226
0.002
1
7mer
26012-26031
0.002
2
6mer
23106-23116
0.002
0
8mer+wobble
18451-18468
0.002
1
6mer
18428-18451
0.002
3
6mer
15865-15888
0.001
1
6mer
9657-9668
0.001
2
6mer
24880-24903
0.001
1
XLOC_011693
hsa-miR-148b-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024250
Biotype: transcript isomorph
Gene id: XLOC_011693
Gene Name: XLOC_011693
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-129
0.035
0
7mer
1286-1291
0.012
0
XLOC_008878
hsa-miR-148b-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017740
Biotype: transcript isomorph
Gene id: XLOC_008878
Gene Name: XLOC_008878
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
479-498
0.034
0
6mer
1163-1183
0.012
0
XLOC_004837
hsa-miR-148b-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009673
Biotype: transcript isomorph
Gene id: XLOC_004837
Gene Name: XLOC_004837
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
952-972
0.040
0
6mer
35-56
0.007
3
RP11-421E14.2
hsa-miR-148b-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581917
Biotype: sense_intronic
Gene id: ENSG00000264895
Gene Name: RP11-421E14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1621-1638
0.031
2
7mer
315-339
0.012
0
6mer
331-351
0.004
0
GS1-124K5.4
hsa-miR-148b-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000445681
Biotype: lincRNA
Gene id: ENSG00000237310
Gene Name: GS1-124K5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
390-410
0.046
1
LINC00933
hsa-miR-148b-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_038273.1
Biotype: lincRNA
Gene id: NR_038273.1 (gene)
Gene Name: LINC00933
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2602-2619
0.015
1
8mer
532-557
0.015
1
7mer
214-229
0.007
0
6mer
2084-2097
0.004
0
6mer
722-745
0.003
1
6mer
338-355
0.003
Not Conserved
RP11-337C18.9
hsa-miR-148b-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606152
Biotype: antisense
Gene id: ENSG00000271721
Gene Name: RP11-337C18.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2110-2126
0.025
1
7mer
44-63
0.021
1
XLOC_006949
hsa-miR-148b-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014881
Biotype: transcript isomorph
Gene id: XLOC_006949
Gene Name: XLOC_006949
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-168
0.046
1
XLOC_006878
hsa-miR-148b-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015327
Biotype: transcript isomorph
Gene id: XLOC_006878
Gene Name: XLOC_006878
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
718-742
0.043
1
6mer
676-703
0.003
1
RP11-111F5.8
hsa-miR-148b-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428709
Biotype: lincRNA
Gene id: ENSG00000233651
Gene Name: RP11-111F5.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-377
0.029
0
8mer
1098-1121
0.017
0
SNAP47-AS1
hsa-miR-148b-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413347
Biotype: antisense
Gene id: ENSG00000230005
Gene Name: SNAP47-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1626-1646
0.046
1
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