LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
LINC01249
hsa-miR-148b-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421212
Biotype: lincRNA
Gene id: ENSG00000231532
Gene Name: LINC01249
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
97-113
0.048
2
6mer
364-381
0.004
0
LINC00939
hsa-miR-148b-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000507313
Biotype: lincRNA
Gene id: ENSG00000249267
Gene Name: LINC00939
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
272-296
0.042
1
7mer
1891-1908
0.007
1
6mer
2270-2290
0.003
0
LINC00939
hsa-miR-148b-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545784
Biotype: lincRNA
Gene id: ENSG00000249267
Gene Name: LINC00939
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
274-298
0.042
1
7mer
864-881
0.007
1
6mer
1243-1263
0.002
0
XLOC_002719
hsa-miR-148b-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005552
Biotype: transcript isomorph
Gene id: XLOC_002719
Gene Name: XLOC_002719
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
585-601
0.044
2
6mer
297-323
0.007
4
RP11-92F20.1
hsa-miR-148b-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000622296
Biotype: antisense
Gene id: ENSG00000274629
Gene Name: RP11-92F20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
699-715
0.034
1
7mer
450-464
0.017
11
CTD-2104P17.2
hsa-miR-148b-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578640
Biotype: antisense
Gene id: ENSG00000264932
Gene Name: CTD-2104P17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-210
0.044
0
6mer
334-345
0.006
1
LINC00935
hsa-miR-148b-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548054
Biotype: lincRNA
Gene id: ENSG00000257987
Gene Name: LINC00935
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
337-356
0.050
8
SVIL-AS1
hsa-miR-148b-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000623175
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-129
0.050
2
XLOC_007765
hsa-miR-148b-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016396
Biotype: transcript isomorph
Gene id: XLOC_007765
Gene Name: XLOC_007765
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
862-867
0.035
1
6mer
449-470
0.015
1
DLX6-AS1
hsa-miR-148b-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7555-7580
0.008
2
8mer
5700-5720
0.007
1
7mer
14575-14592
0.006
0
8mer
8490-8510
0.005
0
7mer
14855-14876
0.005
1
6mer
10272-10289
0.004
8
7mer
3967-3975
0.003
1
6mer
1940-1958
0.002
2
8mer
9612-9636
0.002
1
7mer
7378-7392
0.002
3
6mer
8155-8164
0.002
2
6mer
13205-13228
0.002
2
6mer
9451-9472
0.001
0
LINC00935
hsa-miR-148b-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548380
Biotype: lincRNA
Gene id: ENSG00000257987
Gene Name: LINC00935
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-293
0.050
8
RP11-92F20.1
hsa-miR-148b-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000620050
Biotype: antisense
Gene id: ENSG00000274629
Gene Name: RP11-92F20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
685-701
0.034
1
7mer
436-450
0.016
11
LL22NC03-86G7.1
hsa-miR-148b-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37842-37847
0.019
1
8mer
1218-1235
0.012
0
6mer
19809-19836
0.005
12
6mer
11878-11903
0.002
3
6mer
14784-14793
0.002
3
6mer
954-972
0.002
1
7mer
4220-4236
0.002
1
7mer
34521-34542
0.002
1
6mer
10247-10272
0.002
1
7mer
12214-12229
0.001
0
6mer
33325-33341
0.001
0
XLOC_003387
hsa-miR-148b-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006757
Biotype: transcript isomorph
Gene id: XLOC_003387
Gene Name: XLOC_003387
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1769-1790
0.019
Not Conserved
8mer
1381-1402
0.013
Not Conserved
8mer
1326-1347
0.009
Not Conserved
8mer
1210-1231
0.009
Not Conserved
RP11-359D24.1
hsa-miR-148b-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000471614
Biotype: lincRNA
Gene id: ENSG00000242009
Gene Name: RP11-359D24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
441-457
0.041
2
6mer
297-323
0.008
4
XLOC_007690
hsa-miR-148b-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015562
Biotype: transcript isomorph
Gene id: XLOC_007690
Gene Name: XLOC_007690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
165-179
0.031
1
6mer
993-1011
0.009
1
7mer
192-204
0.009
0
RP11-96O20.5
hsa-miR-148b-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000619041
Biotype: lincRNA
Gene id: ENSG00000275709
Gene Name: RP11-96O20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-216
0.049
4
AC159540.1
hsa-miR-148b-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_103732.1
Biotype: lincRNA
Gene id: NR_103732.1 (gene)
Gene Name: AC159540.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
533-546
0.048
0
XLOC_006133
hsa-miR-148b-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013490
Biotype: transcript isomorph
Gene id: XLOC_006133
Gene Name: XLOC_006133
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
426-446
0.037
1
6mer
184-195
0.011
1
FAM224A
hsa-miR-148b-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000419557
Biotype: lincRNA
Gene id: ENSG00000233522
Gene Name: FAM224A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
1957-1977
0.035
0
7mer
927-949
0.013
0
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