LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_010238
hsa-miR-148b-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020225
Biotype: transcript isomorph
Gene id: XLOC_010238
Gene Name: XLOC_010238
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
272-296
0.042
1
7mer
2944-2954
0.005
Not Conserved
7mer
1891-1908
0.004
1
6mer
2270-2290
0.002
0
LL22NC03-22D1.1
hsa-miR-148b-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6487-6506
0.010
3
7mer
28220-28225
0.007
0
8mer
10642-10651
0.005
1
8mer
17119-17130
0.004
0
6mer
1465-1490
0.004
6
7mer
12805-12827
0.003
1
6mer
9749-9758
0.002
2
6mer
13069-13082
0.002
1
6mer
14208-14216
0.002
0
6mer
8967-8994
0.002
Not Conserved
6mer
13453-13468
0.002
4
6mer
19117-19130
0.002
2
7mer
12433-12459
0.002
0
6mer
18432-18456
0.002
1
6mer
9049-9074
0.002
1
6mer
2993-3017
0.001
0
6mer
7788-7804
0.001
0
6mer
9128-9142
0.000
0
RP11-660M5.1
hsa-miR-148b-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000604448
Biotype: lincRNA
Gene id: ENSG00000271172
Gene Name: RP11-660M5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
503-509
0.054
1
HLA-F-AS1
hsa-miR-148b-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458236
Biotype: processed_transcript
Gene id: ENSG00000214922
Gene Name: HLA-F-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
798-806
0.026
0
8mer
1673-1697
0.014
1
7mer
1682-1701
0.008
1
6mer
530-555
0.006
1
RP13-580B18.4
hsa-miR-148b-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000624628
Biotype: lincRNA
Gene id: ENSG00000279072
Gene Name: RP13-580B18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23742-23761
0.010
0
8mer
250-269
0.009
0
8mer
22531-22544
0.004
0
6mer
23551-23573
0.003
0
7mer
22782-22801
0.003
Not Conserved
6mer
20061-20071
0.002
0
6mer
18420-18436
0.002
0
6mer
10317-10340
0.001
0
6mer
1365-1384
0.001
Not Conserved
6mer
3061-3084
0.001
Not Conserved
6mer
3751-3770
0.001
0
6mer
19042-19061
0.001
0
6mer
12299-12322
0.001
Not Conserved
6mer
17726-17749
0.001
Not Conserved
6mer
1997-2016
0.001
Not Conserved
6mer
14137-14160
0.001
Not Conserved
6mer
6593-6616
0.001
Not Conserved
6mer
8479-8502
0.001
Not Conserved
6mer
15888-15911
0.001
Not Conserved
6mer
4803-4826
0.001
Not Conserved
6mer
12989-13008
0.001
Not Conserved
6mer
16578-16597
0.001
Not Conserved
6mer
5493-5512
0.001
Not Conserved
6mer
11007-11026
0.001
Not Conserved
6mer
7283-7302
0.001
Not Conserved
6mer
9169-9188
0.001
Not Conserved
CTA-796E4.5
hsa-miR-148b-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15338-15352
0.011
1
6mer
100-125
0.007
4
9mer
18776-18798
0.005
1
6mer
3158-3177
0.003
2
6mer
7654-7671
0.003
1
7mer
8831-8843
0.003
2
7mer
25819-25833
0.002
1
6mer
5891-5905
0.002
1
6mer
16501-16522
0.002
0
7mer
6215-6223
0.002
1
6mer
8141-8166
0.002
2
6mer
26951-26962
0.002
1
6mer
15515-15536
0.002
2
7mer
28851-28875
0.002
1
6mer
11643-11664
0.002
0
6mer
28628-28636
0.001
Not Conserved
6mer
22210-22229
0.001
Not Conserved
6mer
11710-11723
0.000
0
AC159540.1
hsa-miR-148b-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_103733.1
Biotype: lincRNA
Gene id: NR_103733.1 (gene)
Gene Name: AC159540.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
744-757
0.053
0
RP11-407A16.4
hsa-miR-148b-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541769
Biotype: lincRNA
Gene id: ENSG00000255944
Gene Name: RP11-407A16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-88
0.053
1
XLOC_011306
hsa-miR-148b-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023266
Biotype: transcript isomorph
Gene id: XLOC_011306
Gene Name: XLOC_011306
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
952-968
0.053
3
RP1-149A16.19
hsa-miR-148b-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000625072
Biotype: lincRNA
Gene id: ENSG00000280361
Gene Name: RP1-149A16.19
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
772-792
0.035
0
6mer
233-243
0.009
0
6mer
131-144
0.008
0
CTD-2636A23.2
hsa-miR-148b-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000565748
Biotype: antisense
Gene id: ENSG00000261604
Gene Name: CTD-2636A23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2010-2029
0.042
2
7mer
3-28
0.011
0
RP13-228J13.1
hsa-miR-148b-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000444722
Biotype: antisense
Gene id: ENSG00000224216
Gene Name: RP13-228J13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
369-392
0.044
1
6mer
293-312
0.008
2
XLOC_010820
hsa-miR-148b-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022986
Biotype: transcript isomorph
Gene id: XLOC_010820
Gene Name: XLOC_010820
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
311-319
0.032
6
6mer
252-276
0.020
6
RP11-264B17.3
hsa-miR-148b-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000354453
Biotype: processed_transcript
Gene id: ENSG00000261067
Gene Name: RP11-264B17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1677-1704
0.052
3
RP11-13E5.2
hsa-miR-148b-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000438994
Biotype: lincRNA
Gene id: ENSG00000237208
Gene Name: RP11-13E5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
348-371
0.052
2
XLOC_009810
hsa-miR-148b-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020476
Biotype: transcript isomorph
Gene id: XLOC_009810
Gene Name: XLOC_009810
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
322-344
0.052
1
XLOC_003550
hsa-miR-148b-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008088
Biotype: transcript isomorph
Gene id: XLOC_003550
Gene Name: XLOC_003550
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-95
0.052
0
LINC01013
hsa-miR-148b-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000447481
Biotype: lincRNA
Gene id: ENSG00000228495
Gene Name: LINC01013
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-207
0.028
1
8mer
719-736
0.024
2
AE000658.31
hsa-miR-148b-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000542992
Biotype: lincRNA
Gene id: ENSG00000248358
Gene Name: AE000658.31
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-345
0.035
1
7mer
430-451
0.016
2
RP11-22A3.2
hsa-miR-148b-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506899
Biotype: lincRNA
Gene id: ENSG00000250371
Gene Name: RP11-22A3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-314
0.036
1
8mer+mismatch
2498-2517
0.005
0
6mer
1921-1939
0.004
1
6mer
564-584
0.004
Not Conserved
6mer
1094-1117
0.003
0
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