LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
PRKG1-AS1
hsa-miR-148b-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000426785
Biotype: antisense
Gene id: ENSG00000236671
Gene Name: PRKG1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-51
0.043
9
6mer
1065-1081
0.010
9
6mer
306-324
0.005
1
XLOC_007118
hsa-miR-148b-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015037
Biotype: transcript isomorph
Gene id: XLOC_007118
Gene Name: XLOC_007118
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4321-4347
0.032
1
6mer
3973-3986
0.025
1
6mer
1474-1497
0.002
Not Conserved
LINC00939
hsa-miR-148b-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000502479
Biotype: lincRNA
Gene id: ENSG00000249267
Gene Name: LINC00939
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
260-284
0.039
1
9mer
1907-1925
0.012
2
7mer
3966-3983
0.006
1
6mer
4345-4365
0.002
0
RP11-690D19.3
hsa-miR-148b-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561652
Biotype: sense_overlapping
Gene id: ENSG00000260966
Gene Name: RP11-690D19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
80-93
0.030
4
7mer
5015-5036
0.012
1
7mer
1461-1484
0.006
2
6mer
370-396
0.004
2
6mer
435-449
0.003
1
6mer
2030-2052
0.002
1
6mer
1957-1973
0.001
1
RP11-684B21.1
hsa-miR-148b-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560056
Biotype: lincRNA
Gene id: ENSG00000259245
Gene Name: RP11-684B21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
379-402
0.058
9
LINC01249
hsa-miR-148b-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432314
Biotype: lincRNA
Gene id: ENSG00000231532
Gene Name: LINC01249
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
97-113
0.058
2
RP11-85I21.1
hsa-miR-148b-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000484222
Biotype: lincRNA
Gene id: ENSG00000241884
Gene Name: RP11-85I21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1982-1998
0.046
0
6mer
1972-1983
0.006
1
7mer
439-454
0.006
0
XLOC_007688
hsa-miR-148b-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015809
Biotype: transcript isomorph
Gene id: XLOC_007688
Gene Name: XLOC_007688
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
586-606
0.049
1
6mer
27-37
0.009
0
XLOC_009308
hsa-miR-148b-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019510
Biotype: transcript isomorph
Gene id: XLOC_009308
Gene Name: XLOC_009308
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
80-98
0.057
1
RP11-10H3.1
hsa-miR-148b-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518222
Biotype: lincRNA
Gene id: ENSG00000253474
Gene Name: RP11-10H3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
596-606
0.050
1
6mer
722-736
0.007
0
XLOC_000847
hsa-miR-148b-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000080
Biotype: transcript isomorph
Gene id: XLOC_000847
Gene Name: XLOC_000847
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1550-1566
0.040
1
7mer
1196-1208
0.008
1
7mer
822-841
0.006
0
6mer
681-692
0.002
1
XLOC_001544
hsa-miR-148b-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004830
Biotype: transcript isomorph
Gene id: XLOC_001544
Gene Name: XLOC_001544
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
307-324
0.037
1
7mer
328-352
0.014
2
6mer
141-155
0.005
0
RP11-378I13.1
hsa-miR-148b-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425435
Biotype: antisense
Gene id: ENSG00000229913
Gene Name: RP11-378I13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1559-1575
0.040
1
7mer
1205-1217
0.008
1
7mer
831-850
0.006
0
6mer
690-701
0.002
1
SVIL-AS1
hsa-miR-148b-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609413
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-169
0.055
2
SVIL-AS1
hsa-miR-148b-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608994
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-144
0.055
2
LINC01249
hsa-miR-148b-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412134
Biotype: lincRNA
Gene id: ENSG00000231532
Gene Name: LINC01249
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2204-2210
0.025
1
8mer
2075-2091
0.023
2
6mer
359-376
0.004
2
6mer
2508-2525
0.003
0
XLOC_006844
hsa-miR-148b-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014759
Biotype: transcript isomorph
Gene id: XLOC_006844
Gene Name: XLOC_006844
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1721-1728
0.051
1
6mer
348-353
0.004
2
XLOC_005158
hsa-miR-148b-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011678
Biotype: transcript isomorph
Gene id: XLOC_005158
Gene Name: XLOC_005158
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
120-135
0.026
1
6mer
120-141
0.022
1
6mer
252-270
0.007
0
XLOC_009628
hsa-miR-148b-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020283
Biotype: transcript isomorph
Gene id: XLOC_009628
Gene Name: XLOC_009628
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
62-78
0.025
1
8mer
836-851
0.010
0
6mer
208-232
0.006
3
7mer
321-336
0.005
1
6mer
6615-6632
0.003
0
6mer
7043-7063
0.002
0
6mer
5198-5206
0.002
1
6mer
6203-6217
0.001
1
6mer
6203-6227
0.001
1
RP11-66B24.4
hsa-miR-148b-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560068
Biotype: antisense
Gene id: ENSG00000259583
Gene Name: RP11-66B24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-104
0.039
0
8mer
2508-2521
0.012
1
6mer
553-568
0.003
2
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