LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
CTBP1-AS2
hsa-miR-148b-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505364
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
740-757
0.034
1
7mer
2059-2075
0.030
1
AC005324.6
hsa-miR-148b-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580194
Biotype: antisense
Gene id: ENSG00000233002
Gene Name: AC005324.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
473-490
0.040
1
6mer
118-136
0.012
1
7mer
358-380
0.011
0
CTA-929C8.9
hsa-miR-148b-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2086-2102
0.011
0
8mer
22231-22251
0.008
1
7mer
6133-6148
0.004
1
7mer
17204-17222
0.003
1
7mer
20890-20905
0.003
Not Conserved
7mer
2440-2446
0.003
1
7mer
15545-15570
0.003
0
6mer
24069-24078
0.003
1
6mer
14038-14058
0.002
1
7mer
4435-4459
0.002
1
8mer
5398-5412
0.002
Not Conserved
6mer
23210-23235
0.002
2
6mer
6478-6504
0.002
Not Conserved
6mer
3608-3631
0.002
1
6mer
22591-22607
0.002
1
6mer
19258-19284
0.002
1
6mer
8226-8237
0.001
1
6mer
21169-21192
0.001
0
7mer
20923-20945
0.001
0
6mer
3188-3214
0.001
0
7mer
11095-11105
0.001
1
6mer
11041-11068
0.001
0
6mer
14050-14066
0.001
2
RP11-258B16.1
hsa-miR-148b-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591558
Biotype: lincRNA
Gene id: ENSG00000267642
Gene Name: RP11-258B16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2076-2098
0.056
4
6mer
2259-2285
0.006
4
RP11-15H20.6
hsa-miR-148b-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601239
Biotype: retained_intron
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2616-2622
0.062
1
CTD-2203A3.1
hsa-miR-148b-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505899
Biotype: lincRNA
Gene id: ENSG00000248789
Gene Name: CTD-2203A3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
198-224
0.061
7
RP11-557J10.5
hsa-miR-148b-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504710
Biotype: lincRNA
Gene id: ENSG00000248686
Gene Name: RP11-557J10.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-145
0.061
3
XLOC_008602
hsa-miR-148b-5p
0.956
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018322
Biotype: transcript isomorph
Gene id: XLOC_008602
Gene Name: XLOC_008602
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
289-305
0.061
1
PRC1-AS1
hsa-miR-148b-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000554388
Biotype: antisense
Gene id: ENSG00000258725
Gene Name: PRC1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-170
0.035
1
9mer
956-968
0.018
0
6mer
24-41
0.004
2
6mer
1460-1475
0.003
0
XLOC_011209
hsa-miR-148b-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023346
Biotype: transcript isomorph
Gene id: XLOC_011209
Gene Name: XLOC_011209
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
454-477
0.060
9
LINC00960
hsa-miR-148b-5p
0.954
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000463183
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
750-773
0.040
1
7mer
792-797
0.021
1
RP11-381K20.4
hsa-miR-148b-5p
0.954
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000604680
Biotype: lincRNA
Gene id: ENSG00000270697
Gene Name: RP11-381K20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
343-359
0.060
2
CTC-276P9.3
hsa-miR-148b-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509530
Biotype: lincRNA
Gene id: ENSG00000248482
Gene Name: CTC-276P9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-66
0.049
7
8mer
285-298
0.011
1
RP11-2E17.2
hsa-miR-148b-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568836
Biotype: lincRNA
Gene id: ENSG00000259967
Gene Name: RP11-2E17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-128
0.060
1
LINC01189
hsa-miR-148b-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428440
Biotype: lincRNA
Gene id: ENSG00000232827
Gene Name: LINC01189
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2201-2224
0.035
1
8mer
2945-2970
0.025
0
NEAT1
hsa-miR-148b-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8173-8198
0.009
2
8mer
10596-10621
0.007
2
7mer
4954-4974
0.006
1
8mer+mismatch
529-551
0.006
2
7mer
2375-2391
0.004
2
6mer
3628-3647
0.004
5
7mer
15678-15684
0.003
0
7mer
18079-18095
0.003
0
6mer
6906-6921
0.002
1
6mer
253-271
0.002
1
6mer
15325-15350
0.002
0
6mer
13663-13680
0.002
1
6mer
5439-5463
0.002
1
6mer
1986-2012
0.002
0
6mer
17406-17419
0.002
1
6mer
5881-5902
0.001
0
6mer
11691-11711
0.001
1
6mer
6968-6987
0.001
Not Conserved
RP13-20L14.4
hsa-miR-148b-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579188
Biotype: sense_intronic
Gene id: ENSG00000264812
Gene Name: RP13-20L14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-135
0.060
2
AC073254.1
hsa-miR-148b-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596622
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
435-455
0.059
3
CTD-2196E14.3
hsa-miR-148b-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561764
Biotype: antisense
Gene id: ENSG00000261723
Gene Name: CTD-2196E14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
393-414
0.059
3
UG0898H09
hsa-miR-148b-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000622794
Biotype: lincRNA
Gene id: ENSG00000274956
Gene Name: UG0898H09
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3860-3881
0.040
2
7mer
3699-3722
0.008
1
6mer
3818-3844
0.006
4
6mer
3681-3695
0.004
1
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