LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
RP11-752D24.2
hsa-miR-148b-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504048
Biotype: antisense
Gene id: ENSG00000248115
Gene Name: RP11-752D24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
348-359
0.042
1
ZNF252P-AS1
hsa-miR-148b-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000527067
Biotype: antisense
Gene id: ENSG00000255559
Gene Name: ZNF252P-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2957-2983
0.012
1
7mer
3090-3106
0.009
1
7mer
2707-2727
0.008
1
6mer
72-99
0.005
1
6mer
2776-2787
0.004
2
7mer
1952-1971
0.003
0
SLC26A4-AS1
hsa-miR-148b-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440512
Biotype: antisense
Gene id: ENSG00000233705
Gene Name: SLC26A4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3274-3287
0.021
2
6mer
581-588
0.006
4
8mer
2065-2091
0.005
2
7mer
3267-3287
0.005
1
6mer
3474-3489
0.005
0
RP11-403N16.3
hsa-miR-148b-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000565707
Biotype: lincRNA
Gene id: ENSG00000260564
Gene Name: RP11-403N16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1831-1846
0.015
3
7mer
2371-2380
0.012
6
7mer
2948-2973
0.009
1
7mer
812-829
0.006
1
RP11-408H1.3
hsa-miR-148b-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000441185
Biotype: lincRNA
Gene id: ENSG00000223387
Gene Name: RP11-408H1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-311
0.042
2
XLOC_013012
hsa-miR-148b-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026954
Biotype: transcript isomorph
Gene id: XLOC_013012
Gene Name: XLOC_013012
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
731-754
0.042
0
SNHG14
hsa-miR-148b-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000580438
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-91
0.031
1
7mer
694-721
0.011
1
XLOC_006794
hsa-miR-148b-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014698
Biotype: transcript isomorph
Gene id: XLOC_006794
Gene Name: XLOC_006794
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
490-500
0.038
1
6mer
616-630
0.004
0
TESC-AS1
hsa-miR-148b-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547006
Biotype: lincRNA
Gene id: ENSG00000258285
Gene Name: TESC-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
960-981
0.042
4
AC091729.9
hsa-miR-148b-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000422230
Biotype: antisense
Gene id: ENSG00000229043
Gene Name: AC091729.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-478
0.037
0
6mer
507-520
0.004
0
RP11-503L23.1
hsa-miR-148b-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515805
Biotype: lincRNA
Gene id: ENSG00000249708
Gene Name: RP11-503L23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-168
0.032
1
7mer
129-148
0.009
2
RP11-81H3.2
hsa-miR-148b-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551210
Biotype: lincRNA
Gene id: ENSG00000251138
Gene Name: RP11-81H3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
40-61
0.025
1
6mer
125-146
0.016
1
RP11-752D24.2
hsa-miR-148b-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508813
Biotype: antisense
Gene id: ENSG00000248115
Gene Name: RP11-752D24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
325-336
0.038
1
6mer
1718-1727
0.003
3
LINC00692
hsa-miR-148b-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496997
Biotype: processed_transcript
Gene id: ENSG00000230891
Gene Name: LINC00692
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
496-519
0.041
2
PRC1-AS1
hsa-miR-148b-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556200
Biotype: antisense
Gene id: ENSG00000258725
Gene Name: PRC1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-197
0.036
1
6mer
51-68
0.005
2
MIR1255B1
hsa-miR-148b-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439234
Biotype: antisense
Gene id: ENSG00000223770
Gene Name: MIR1255B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2467-2483
0.033
2
6mer
1137-1159
0.003
1
6mer
1613-1640
0.003
1
6mer
1437-1459
0.002
1
XLOC_013268
hsa-miR-148b-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027230
Biotype: transcript isomorph
Gene id: XLOC_013268
Gene Name: XLOC_013268
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
53-71
0.030
0
6mer
462-482
0.011
0
RP11-531A24.5
hsa-miR-148b-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517664
Biotype: antisense
Gene id: ENSG00000253636
Gene Name: RP11-531A24.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
58-76
0.041
1
AC018462.2
hsa-miR-148b-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421323
Biotype: antisense
Gene id: ENSG00000229839
Gene Name: AC018462.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-201
0.036
1
6mer
452-479
0.004
0
CTD-3088G3.6
hsa-miR-148b-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000572950
Biotype: antisense
Gene id: ENSG00000262999
Gene Name: CTD-3088G3.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
424-443
0.025
Not Conserved
9mer
203-220
0.011
0
7mer
1972-1987
0.005
Not Conserved
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