LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
C21orf67
hsa-miR-146a-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_027128.1
Biotype: lincRNA
Gene id: NR_027128.1 (gene)
Gene Name: C21orf67
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
994-1009
0.039
1
7mer
83-110
0.009
0
6mer
625-646
0.001
Not Conserved
XLOC_006529
hsa-miR-146a-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013891
Biotype: transcript isomorph
Gene id: XLOC_006529
Gene Name: XLOC_006529
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2892-2916
0.017
0
6mer
639-654
0.009
7
6mer
190-214
0.005
1
7mer
1308-1319
0.005
1
7mer
2648-2673
0.004
1
6mer
4099-4112
0.004
3
6mer
859-876
0.003
1
6mer
2556-2573
0.001
3
6mer
2496-2508
0.001
2
RP11-367F23.2
hsa-miR-146a-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000563268
Biotype: lincRNA
Gene id: ENSG00000260454
Gene Name: RP11-367F23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-434
0.046
1
6mer
712-722
0.003
1
RBFADN
hsa-miR-146a-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000566810
Biotype: lincRNA
Gene id: ENSG00000261126
Gene Name: RBFADN
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-281
0.042
2
6mer
83-97
0.007
2
TSIX
hsa-miR-146a-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34424-34443
0.006
2
8mer
24250-24259
0.005
2
7mer
18221-18243
0.003
1
6mer
28763-28785
0.003
2
6mer
33928-33951
0.003
7
6mer
4747-4763
0.002
2
6mer
27909-27931
0.002
2
6mer
23545-23562
0.002
1
6mer
30672-30691
0.002
0
6mer
1655-1672
0.002
2
6mer
32358-32375
0.002
3
6mer
33977-33993
0.002
7
6mer
6332-6357
0.002
1
6mer
18860-18881
0.002
1
6mer
3883-3909
0.001
0
6mer
21617-21643
0.001
2
6mer
33716-33725
0.001
1
6mer
26340-26365
0.001
1
6mer
15909-15928
0.001
Not Conserved
6mer
9419-9435
0.001
1
6mer
34056-34077
0.001
1
6mer
15397-15415
0.001
Not Conserved
6mer
16720-16741
0.001
0
6mer
16978-16996
0.001
Not Conserved
6mer
23733-23758
0.001
0
6mer
11392-11407
0.001
Not Conserved
6mer
23624-23650
0.001
2
6mer
27943-27958
0.001
3
6mer
21641-21658
0.001
1
6mer
3986-4003
0.001
0
XLOC_004153
hsa-miR-146a-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008642
Biotype: transcript isomorph
Gene id: XLOC_004153
Gene Name: XLOC_004153
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-113
0.049
Not Conserved
RP11-319G9.3
hsa-miR-146a-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568885
Biotype: sense_intronic
Gene id: ENSG00000260816
Gene Name: RP11-319G9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
629-654
0.030
2
7mer
4117-4137
0.011
1
8mer
1506-1512
0.005
1
6mer
2127-2149
0.002
1
RP11-120K24.3
hsa-miR-146a-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000602192
Biotype: lincRNA
Gene id: ENSG00000267868
Gene Name: RP11-120K24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-154
0.048
1
RP11-147C23.1
hsa-miR-146a-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609411
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
435-447
0.037
3
6mer
617-632
0.007
2
6mer
375-397
0.004
2
RP11-327I22.5
hsa-miR-146a-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000621949
Biotype: lincRNA
Gene id: ENSG00000278849
Gene Name: RP11-327I22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
492-517
0.030
0
6mer
596-611
0.018
0
XLOC_011222
hsa-miR-146a-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023376
Biotype: transcript isomorph
Gene id: XLOC_011222
Gene Name: XLOC_011222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-304
0.048
0
RP11-1151B14.2
hsa-miR-146a-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585470
Biotype: lincRNA
Gene id: ENSG00000267675
Gene Name: RP11-1151B14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-48
0.048
3
MIR17HG
hsa-miR-146a-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000581816
Biotype: lincRNA
Gene id: ENSG00000215417
Gene Name: MIR17HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
193-208
0.048
0
RP11-37C7.3
hsa-miR-146a-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564211
Biotype: antisense
Gene id: ENSG00000261136
Gene Name: RP11-37C7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2038-2056
0.024
1
7mer
2808-2824
0.011
0
6mer
2611-2634
0.006
3
6mer
701-726
0.004
3
6mer
1966-1983
0.003
2
LINC00861
hsa-miR-146a-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000500989
Biotype: lincRNA
Gene id: ENSG00000245164
Gene Name: LINC00861
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4777-4796
0.017
0
7mer
57-72
0.009
1
6mer
119-129
0.005
1
6mer
106-129
0.004
0
6mer
702-717
0.004
1
8mer
3546-3564
0.004
0
6mer
4163-4177
0.003
1
6mer
1218-1244
0.002
0
6mer
3805-3826
0.002
1
RP11-680F20.10
hsa-miR-146a-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000569238
Biotype: lincRNA
Gene id: ENSG00000260209
Gene Name: RP11-680F20.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
779-802
0.037
0
6mer
770-779
0.010
0
AC137932.6
hsa-miR-146a-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565667
Biotype: antisense
Gene id: ENSG00000261253
Gene Name: AC137932.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-422
0.047
1
XLOC_009393
hsa-miR-146a-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020049
Biotype: transcript isomorph
Gene id: XLOC_009393
Gene Name: XLOC_009393
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
794-808
0.047
1
RP11-789C2.1
hsa-miR-146a-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000420721
Biotype: lincRNA
Gene id: ENSG00000251598
Gene Name: RP11-789C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
260-286
0.047
1
XLOC_002541
hsa-miR-146a-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004627
Biotype: transcript isomorph
Gene id: XLOC_002541
Gene Name: XLOC_002541
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
118-143
0.031
1
7mer
98-118
0.016
1
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