LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
SC22CB-109E1.1
hsa-miR-146a-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623290
Biotype: lincRNA
Gene id: ENSG00000279582
Gene Name: SC22CB-109E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9984-10009
0.016
1
7mer
4157-4181
0.012
2
9mer
1113-1132
0.008
1
7mer
8620-8640
0.007
1
6mer
2217-2231
0.003
2
6mer
895-913
0.002
Not Conserved
6mer
3332-3348
0.002
1
6mer
8288-8312
0.001
0
F10-AS1
hsa-miR-146a-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000424635
Biotype: antisense
Gene id: ENSG00000231882
Gene Name: F10-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-95
0.051
0
XLOC_004844
hsa-miR-146a-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009283
Biotype: transcript isomorph
Gene id: XLOC_004844
Gene Name: XLOC_004844
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1456-1474
0.048
1
6mer
429-440
0.003
1
RP5-857K21.1
hsa-miR-146a-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417636
Biotype: lincRNA
Gene id: ENSG00000231709
Gene Name: RP5-857K21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
421-445
0.034
0
6mer
707-724
0.017
0
XLOC_007321
hsa-miR-146a-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015945
Biotype: transcript isomorph
Gene id: XLOC_007321
Gene Name: XLOC_007321
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
507-522
0.042
0
6mer
396-417
0.009
0
RP11-692C24.1
hsa-miR-146a-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000553410
Biotype: lincRNA
Gene id: ENSG00000258954
Gene Name: RP11-692C24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5-29
0.051
1
SATB1-AS1
hsa-miR-146a-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000596152
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-44
0.024
3
7mer
316-333
0.014
4
6mer
144-168
0.006
5
6mer
247-266
0.006
4
RP11-210K20.5
hsa-miR-146a-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000616300
Biotype: sense_intronic
Gene id: ENSG00000276282
Gene Name: RP11-210K20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
517-538
0.051
1
RP11-166D19.1
hsa-miR-146a-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531381
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
143-164
0.032
0
6mer
2856-2882
0.008
9
6mer
3211-3226
0.007
7
6mer
324-339
0.004
0
LINC01517
hsa-miR-146a-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000611112
Biotype: lincRNA
Gene id: ENSG00000232624
Gene Name: LINC01517
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
499-514
0.050
0
PWRN1
hsa-miR-146a-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562244
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16-38
0.050
1
RP11-307C12.13
hsa-miR-146a-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000604546
Biotype: lincRNA
Gene id: ENSG00000270361
Gene Name: RP11-307C12.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
668-682
0.050
1
XLOC_000744
hsa-miR-146a-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001429
Biotype: transcript isomorph
Gene id: XLOC_000744
Gene Name: XLOC_000744
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-29
0.047
0
6mer
1571-1590
0.003
1
RP11-214O1.3
hsa-miR-146a-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584683
Biotype: lincRNA
Gene id: ENSG00000266378
Gene Name: RP11-214O1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
819-836
0.044
2
6mer
1909-1933
0.005
1
RP11-932O9.8
hsa-miR-146a-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000602595
Biotype: antisense
Gene id: ENSG00000270016
Gene Name: RP11-932O9.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-250
0.050
0
RP11-693J15.5
hsa-miR-146a-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000504409
Biotype: lincRNA
Gene id: ENSG00000205056
Gene Name: RP11-693J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4644-4660
0.022
5
8mer
6706-6719
0.012
1
7mer
4842-4859
0.011
1
7mer
3412-3430
0.004
1
RP11-408E5.5
hsa-miR-146a-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000428785
Biotype: lincRNA
Gene id: ENSG00000232243
Gene Name: RP11-408E5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-326
0.050
1
RP11-321G12.1
hsa-miR-146a-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559379
Biotype: lincRNA
Gene id: ENSG00000259459
Gene Name: RP11-321G12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14-34
0.047
4
6mer
116-138
0.003
1
RP11-978I15.10
hsa-miR-146a-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435333
Biotype: antisense
Gene id: ENSG00000236817
Gene Name: RP11-978I15.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-141
0.050
1
XLOC_011448
hsa-miR-146a-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023648
Biotype: transcript isomorph
Gene id: XLOC_011448
Gene Name: XLOC_011448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5297-5319
0.019
3
8mer
5491-5506
0.014
5
8mer
6870-6889
0.008
Not Conserved
6mer
9324-9340
0.004
4
6mer
6400-6423
0.003
8
6mer
4043-4063
0.002
1
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