LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
SOX2-OT
hsa-miR-146a-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000598867
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
277-298
0.053
2
RP11-203J24.8
hsa-miR-146a-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000587355
Biotype: antisense
Gene id: ENSG00000227218
Gene Name: RP11-203J24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-79
0.053
2
CTD-2140G10.4
hsa-miR-146a-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534543
Biotype: antisense
Gene id: ENSG00000254540
Gene Name: CTD-2140G10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
121-138
0.031
0
7mer
64-70
0.022
1
RP11-203J24.8
hsa-miR-146a-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590283
Biotype: antisense
Gene id: ENSG00000227218
Gene Name: RP11-203J24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-82
0.053
2
RP11-166D19.1
hsa-miR-146a-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529823
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-161
0.034
0
6mer
2832-2858
0.008
9
6mer
3187-3202
0.006
7
6mer
321-336
0.004
0
RP11-203J24.8
hsa-miR-146a-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000586374
Biotype: antisense
Gene id: ENSG00000227218
Gene Name: RP11-203J24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-88
0.052
2
MAMDC2-AS1
hsa-miR-146a-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448377
Biotype: antisense
Gene id: ENSG00000204706
Gene Name: MAMDC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-245
0.052
2
RP11-626I20.3
hsa-miR-146a-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551174
Biotype: lincRNA
Gene id: ENSG00000257762
Gene Name: RP11-626I20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
323-348
0.052
5
RP11-495P10.8
hsa-miR-146a-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434245
Biotype: lincRNA
Gene id: ENSG00000231196
Gene Name: RP11-495P10.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
205-228
0.039
0
6mer
125-148
0.013
0
CTA-796E4.5
hsa-miR-146a-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15181-15195
0.006
1
8mer
2493-2515
0.006
0
7mer
14427-14452
0.005
2
7mer
29702-29711
0.005
1
7mer
16083-16106
0.004
1
6mer
456-483
0.003
1
6mer
5820-5840
0.003
6
6mer
454-473
0.003
1
6mer
19104-19124
0.002
3
6mer
25758-25774
0.002
4
6mer
20905-20931
0.002
0
6mer
17273-17290
0.002
1
6mer
26033-26055
0.002
1
6mer
19963-19983
0.002
1
6mer
5050-5066
0.001
1
6mer
30022-30033
0.001
1
6mer
15342-15361
0.001
1
6mer
14663-14683
0.001
1
6mer
8645-8665
0.001
1
ERVK3-1
hsa-miR-146a-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000434052
Biotype: retained_intron
Gene id: ENSG00000142396
Gene Name: ERVK3-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
321-338
0.052
0
RP11-656D10.5
hsa-miR-146a-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453437
Biotype: antisense
Gene id: ENSG00000227278
Gene Name: RP11-656D10.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8-34
0.026
0
7mer
291-308
0.019
3
6mer
244-270
0.006
6
JPX
hsa-miR-146a-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000414209
Biotype: lincRNA
Gene id: ENSG00000225470
Gene Name: JPX
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2071-2093
0.052
Not Conserved
LINC00278
hsa-miR-146a-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000444263
Biotype: lincRNA
Gene id: ENSG00000231535
Gene Name: LINC00278
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
438-445
0.052
1
LOC100506526
hsa-miR-146a-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_105000.1
Biotype: lincRNA
Gene id: NR_105000.1 (gene)
Gene Name: LOC100506526
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1119-1137
0.049
1
6mer
429-440
0.003
1
RP11-196D18.1
hsa-miR-146a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450891
Biotype: lincRNA
Gene id: ENSG00000227148
Gene Name: RP11-196D18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
101-125
0.051
3
CTD-2382H12.1
hsa-miR-146a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580639
Biotype: lincRNA
Gene id: ENSG00000265101
Gene Name: CTD-2382H12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
295-305
0.051
1
RP11-203J24.8
hsa-miR-146a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000588890
Biotype: antisense
Gene id: ENSG00000227218
Gene Name: RP11-203J24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-118
0.051
2
RP11-203J24.8
hsa-miR-146a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000587978
Biotype: antisense
Gene id: ENSG00000227218
Gene Name: RP11-203J24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-118
0.051
2
XLOC_014323
hsa-miR-146a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029662
Biotype: transcript isomorph
Gene id: XLOC_014323
Gene Name: XLOC_014323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1253-1272
0.037
1
6mer
840-853
0.007
6
6mer
199-220
0.007
3
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