LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_006416
hsa-miR-146a-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013783
Biotype: transcript isomorph
Gene id: XLOC_006416
Gene Name: XLOC_006416
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-122
0.057
1
LUCAT1
hsa-miR-146a-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513626
Biotype: lincRNA
Gene id: ENSG00000248323
Gene Name: LUCAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1960-1985
0.057
5
FLJ22763
hsa-miR-146a-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000593799
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
391-407
0.057
1
RP11-407N17.4
hsa-miR-146a-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556537
Biotype: antisense
Gene id: ENSG00000259083
Gene Name: RP11-407N17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-435
0.049
8
7mer
113-127
0.007
0
RP4-717I23.3
hsa-miR-146a-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415150
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
384-403
0.039
2
6mer
71-88
0.017
8
XLOC_013931
hsa-miR-146a-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028843
Biotype: transcript isomorph
Gene id: XLOC_013931
Gene Name: XLOC_013931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
501-520
0.045
0
6mer
866-879
0.011
0
XLOC_012200
hsa-miR-146a-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025387
Biotype: transcript isomorph
Gene id: XLOC_012200
Gene Name: XLOC_012200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-387
0.055
1
FLJ22763
hsa-miR-146a-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000622536
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
427-443
0.055
1
RP11-166P13.4
hsa-miR-146a-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576014
Biotype: antisense
Gene id: ENSG00000263089
Gene Name: RP11-166P13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-457
0.030
3
8mer+wobble
563-583
0.019
1
6mer
7-30
0.004
1
6mer
2224-2241
0.002
3
XLOC_011696
hsa-miR-146a-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024372
Biotype: transcript isomorph
Gene id: XLOC_011696
Gene Name: XLOC_011696
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
113-128
0.017
0
6mer
2017-2032
0.015
0
6mer
623-647
0.010
0
6mer
1242-1264
0.009
0
6mer
502-514
0.004
Not Conserved
DSCR8
hsa-miR-146a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026839.1
Biotype: sense
Gene id: NR_026839.1 (gene)
Gene Name: DSCR8
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
620-643
0.054
3
RP3-333B15.5
hsa-miR-146a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000611020
Biotype: lincRNA
Gene id: ENSG00000273838
Gene Name: RP3-333B15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
435-459
0.042
Not Conserved
6mer
414-430
0.007
1
6mer
259-277
0.006
0
CTD-2621I17.6
hsa-miR-146a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587218
Biotype: lincRNA
Gene id: ENSG00000267522
Gene Name: CTD-2621I17.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
308-327
0.022
0
7mer
1534-1557
0.017
0
7mer
1366-1379
0.015
1
XLOC_013163
hsa-miR-146a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026836
Biotype: transcript isomorph
Gene id: XLOC_013163
Gene Name: XLOC_013163
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
308-327
0.022
0
7mer
1534-1557
0.017
0
7mer
1366-1379
0.015
1
XLOC_010248
hsa-miR-146a-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020983
Biotype: transcript isomorph
Gene id: XLOC_010248
Gene Name: XLOC_010248
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Liver Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-306
0.033
1
7mer
74-100
0.021
1
LINC00847
hsa-miR-146a-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502162
Biotype: lincRNA
Gene id: ENSG00000245060
Gene Name: LINC00847
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
241-262
0.044
1
6mer
313-326
0.004
1
6mer
1354-1376
0.003
0
7mer
134-157
0.003
Not Conserved
AC073115.7
hsa-miR-146a-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436056
Biotype: lincRNA
Gene id: ENSG00000229628
Gene Name: AC073115.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-166
0.054
1
AC024560.2
hsa-miR-146a-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424493
Biotype: lincRNA
Gene id: ENSG00000236833
Gene Name: AC024560.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1092-1115
0.032
0
6mer
371-385
0.013
0
6mer
811-823
0.006
0
6mer
1118-1136
0.002
Not Conserved
CLIP1-AS1
hsa-miR-146a-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535976
Biotype: lincRNA
Gene id: ENSG00000257097
Gene Name: CLIP1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1632-1658
0.043
0
7mer
841-860
0.011
1
DSCR8
hsa-miR-146a-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026838.1
Biotype: sense
Gene id: NR_026838.1 (gene)
Gene Name: DSCR8
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
717-740
0.049
3
6mer
554-572
0.004
1
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