LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
GS1-279B7.1
hsa-miR-146a-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562817
Biotype: lincRNA
Gene id: ENSG00000261024
Gene Name: GS1-279B7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-300
0.061
2
RP11-307L14.1
hsa-miR-146a-5p
0.956
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607786
Biotype: lincRNA
Gene id: ENSG00000272370
Gene Name: RP11-307L14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
158-184
0.061
2
RBFADN
hsa-miR-146a-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000564686
Biotype: lincRNA
Gene id: ENSG00000261126
Gene Name: RBFADN
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
343-363
0.053
2
6mer
165-179
0.008
2
RP11-142C4.6
hsa-miR-146a-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525714
Biotype: antisense
Gene id: ENSG00000255240
Gene Name: RP11-142C4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
449-469
0.050
1
7mer
327-350
0.011
1
AL157902.3
hsa-miR-146a-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425010
Biotype: antisense
Gene id: ENSG00000236866
Gene Name: AL157902.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
433-447
0.053
4
6mer
461-486
0.004
0
6mer
595-619
0.003
1
RP11-142C4.6
hsa-miR-146a-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532098
Biotype: antisense
Gene id: ENSG00000255240
Gene Name: RP11-142C4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-200
0.060
1
XLOC_009145
hsa-miR-146a-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019312
Biotype: transcript isomorph
Gene id: XLOC_009145
Gene Name: XLOC_009145
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
325-340
0.059
1
STX18-AS1
hsa-miR-146a-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608184
Biotype: antisense
Gene id: ENSG00000247708
Gene Name: STX18-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2886-2904
0.025
0
8mer
680-706
0.015
0
6mer
3012-3026
0.010
4
6mer
2975-2998
0.007
2
6mer
882-903
0.003
2
XLOC_006253
hsa-miR-146a-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013599
Biotype: transcript isomorph
Gene id: XLOC_006253
Gene Name: XLOC_006253
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
31-56
0.031
1
7mer
207-225
0.010
1
6mer
46-70
0.008
4
6mer
5149-5168
0.006
1
6mer
100-120
0.006
1
XLOC_012351
hsa-miR-146a-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025203
Biotype: transcript isomorph
Gene id: XLOC_012351
Gene Name: XLOC_012351
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
433-455
0.042
0
7mer
423-435
0.017
0
XLOC_002383
hsa-miR-146a-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004488
Biotype: transcript isomorph
Gene id: XLOC_002383
Gene Name: XLOC_002383
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-69
0.055
0
6mer
463-474
0.004
2
XLOC_010752
hsa-miR-146a-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022420
Biotype: transcript isomorph
Gene id: XLOC_010752
Gene Name: XLOC_010752
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1776-1787
0.046
1
7mer
1814-1837
0.013
0
XLOC_014351
hsa-miR-146a-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029899
Biotype: transcript isomorph
Gene id: XLOC_014351
Gene Name: XLOC_014351
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-147
0.059
4
XLOC_004361
hsa-miR-146a-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009933
Biotype: transcript isomorph
Gene id: XLOC_004361
Gene Name: XLOC_004361
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-377
0.055
1
6mer
1159-1178
0.003
Not Conserved
RP11-92C4.3
hsa-miR-146a-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000589257
Biotype: antisense
Gene id: ENSG00000267026
Gene Name: RP11-92C4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
455-479
0.059
1
ADAMTS9-AS1
hsa-miR-146a-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000470447
Biotype: antisense
Gene id: ENSG00000241158
Gene Name: ADAMTS9-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
866-884
0.030
0
7mer
838-861
0.016
1
7mer
37-62
0.013
2
RP11-362K2.2
hsa-miR-146a-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552519
Biotype: lincRNA
Gene id: ENSG00000258231
Gene Name: RP11-362K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
594-620
0.054
1
6mer
493-518
0.003
0
RP11-33M22.2
hsa-miR-146a-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609720
Biotype: lincRNA
Gene id: ENSG00000272880
Gene Name: RP11-33M22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
258-272
0.048
3
6mer
168-191
0.010
4
RP11-362K2.2
hsa-miR-146a-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548969
Biotype: lincRNA
Gene id: ENSG00000258231
Gene Name: RP11-362K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
730-756
0.054
1
6mer
628-654
0.004
0
XLOC_013274
hsa-miR-146a-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4206-4233
0.053
1
6mer
4407-4432
0.004
1
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