LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
LINC01010
hsa-miR-146a-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038216.1
Biotype: lincRNA
Gene id: NR_038216.1 (gene)
Gene Name: LINC01010
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1555-1582
0.064
1
LINC00703
hsa-miR-146a-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000434902
Biotype: lincRNA
Gene id: ENSG00000224382
Gene Name: LINC00703
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
849-863
0.058
0
6mer
295-314
0.006
4
CTC-459F4.3
hsa-miR-146a-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2160-2174
0.046
0
6mer
1816-1839
0.010
0
6mer
1873-1887
0.007
0
AC074289.1
hsa-miR-146a-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449678
Biotype: antisense
Gene id: ENSG00000225889
Gene Name: AC074289.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
23-41
0.053
2
7mer
339-357
0.011
4
LINC01010
hsa-miR-146a-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000456749
Biotype: lincRNA
Gene id: ENSG00000236700
Gene Name: LINC01010
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1372-1399
0.064
1
LINC01010
hsa-miR-146a-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000440090
Biotype: lincRNA
Gene id: ENSG00000236700
Gene Name: LINC01010
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1284-1311
0.063
1
RP11-542K23.9
hsa-miR-146a-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000412262
Biotype: antisense
Gene id: ENSG00000231465
Gene Name: RP11-542K23.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
225-241
0.063
1
MIR6818
hsa-miR-146a-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33007-33021
0.018
2
6mer
40779-40794
0.005
12
7mer
34480-34490
0.005
8
7mer
24150-24163
0.004
2
7mer
7462-7478
0.003
2
7mer
21720-21732
0.003
2
6mer
4238-4254
0.003
3
7mer
31615-31636
0.003
0
6mer
19898-19924
0.003
9
6mer
33828-33848
0.002
3
6mer
15779-15798
0.002
2
6mer
38720-38728
0.002
4
6mer
27968-27985
0.002
1
6mer
18394-18416
0.002
3
6mer
39829-39855
0.001
1
6mer
24321-24336
0.001
0
6mer
35351-35365
0.001
0
6mer
16785-16801
0.001
1
6mer
1567-1584
0.001
1
8mer
7451-7464
0.001
0
RP11-297M9.2
hsa-miR-146a-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562861
Biotype: lincRNA
Gene id: ENSG00000260432
Gene Name: RP11-297M9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4098-4123
0.034
3
8mer
3775-3793
0.007
2
6mer
658-668
0.006
5
7mer
1300-1324
0.005
1
6mer
1536-1557
0.004
7
6mer
4364-4385
0.003
1
6mer
3190-3211
0.001
2
6mer
2068-2088
0.001
1
6mer
1958-1975
0.001
1
XLOC_006079
hsa-miR-146a-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013003
Biotype: transcript isomorph
Gene id: XLOC_006079
Gene Name: XLOC_006079
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
530-546
0.035
1
9mer
210-231
0.028
0
AC009948.5
hsa-miR-146a-5p
0.960
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000436616
Biotype: antisense
Gene id: ENSG00000223960
Gene Name: AC009948.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
817-840
0.063
0
SPTY2D1-AS1
hsa-miR-146a-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_038360.1
Biotype: antisense
Gene id: NR_038360.1 (gene)
Gene Name: SPTY2D1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
532-552
0.062
6
RP11-2H3.6
hsa-miR-146a-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609771
Biotype: lincRNA
Gene id: ENSG00000272885
Gene Name: RP11-2H3.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
306-319
0.062
1
SOX2-OT
hsa-miR-146a-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000472856
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
254-275
0.062
2
DSCR8
hsa-miR-146a-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026841.1
Biotype: sense
Gene id: NR_026841.1 (gene)
Gene Name: DSCR8
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
460-483
0.058
3
6mer
297-315
0.004
1
SPTY2D1-AS1
hsa-miR-146a-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501599
Biotype: antisense
Gene id: ENSG00000247595
Gene Name: SPTY2D1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
549-569
0.062
6
RP11-6N13.4
hsa-miR-146a-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523745
Biotype: lincRNA
Gene id: ENSG00000253776
Gene Name: RP11-6N13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
83-105
0.062
0
XLOC_006740
hsa-miR-146a-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014650
Biotype: transcript isomorph
Gene id: XLOC_006740
Gene Name: XLOC_006740
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
228-246
0.051
1
7mer
205-230
0.011
0
DSCR8
hsa-miR-146a-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026842.1
Biotype: sense
Gene id: NR_026842.1 (gene)
Gene Name: DSCR8
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
363-386
0.062
3
LINC01010
hsa-miR-146a-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038217.1
Biotype: lincRNA
Gene id: NR_038217.1 (gene)
Gene Name: LINC01010
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1346-1373
0.062
1
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