LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
CTD-2583A14.8
hsa-miR-146a-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597780
Biotype: sense_intronic
Gene id: ENSG00000269867
Gene Name: CTD-2583A14.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-233
0.062
0
7mer
313-331
0.011
0
FLJ22763
hsa-miR-146a-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000479039
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
423-439
0.072
1
AC000123.4
hsa-miR-146a-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000418215
Biotype: antisense
Gene id: ENSG00000224138
Gene Name: AC000123.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
373-395
0.067
2
6mer
177-189
0.004
0
RP11-74E22.5
hsa-miR-146a-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000610120
Biotype: antisense
Gene id: ENSG00000272770
Gene Name: RP11-74E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
318-331
0.071
4
AL157902.3
hsa-miR-146a-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456126
Biotype: antisense
Gene id: ENSG00000236866
Gene Name: AL157902.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
197-211
0.062
4
6mer
225-250
0.005
0
6mer
359-383
0.003
1
XLOC_011494
hsa-miR-146a-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00024132
Biotype: transcript isomorph
Gene id: XLOC_011494
Gene Name: XLOC_011494
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
405-425
0.052
1
7mer
968-979
0.018
0
FLJ22763
hsa-miR-146a-5p
0.972
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000612064
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-358
0.069
1
DSCR8
hsa-miR-146a-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026840.1
Biotype: sense
Gene id: NR_026840.1 (gene)
Gene Name: DSCR8
UCSC graphic: -
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
478-501
0.064
3
6mer
315-333
0.005
1
XLOC_001447
hsa-miR-146a-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003660
Biotype: transcript isomorph
Gene id: XLOC_001447
Gene Name: XLOC_001447
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-138
0.068
4
DARS-AS1
hsa-miR-146a-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000595624
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
629-642
0.054
5
6mer
405-421
0.007
7
6mer
119-144
0.005
2
6mer
459-478
0.002
3
CTC-270D5.1
hsa-miR-146a-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000623615
Biotype: antisense
Gene id: ENSG00000279047
Gene Name: CTC-270D5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
407-426
0.056
3
8mer
112-138
0.011
1
FLJ22763
hsa-miR-146a-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467240
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1915-1931
0.061
1
6mer
1522-1538
0.004
1
6mer
419-444
0.002
1
XLOC_004924
hsa-miR-146a-5p
0.967
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010403
Biotype: transcript isomorph
Gene id: XLOC_004924
Gene Name: XLOC_004924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10213-10238
0.046
5
8mer
7009-7031
0.009
1
8mer
5867-5891
0.007
2
6mer
7221-7247
0.002
2
6mer
1014-1037
0.002
3
AL157902.3
hsa-miR-146a-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440801
Biotype: antisense
Gene id: ENSG00000236866
Gene Name: AL157902.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
195-209
0.060
4
6mer
223-248
0.005
0
FLJ22763
hsa-miR-146a-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000619765
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
502-518
0.065
1
ZBED5-AS1
hsa-miR-146a-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501079
Biotype: antisense
Gene id: ENSG00000247271
Gene Name: ZBED5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-135
0.046
1
7mer
16-40
0.019
1
MIR222HG
hsa-miR-146a-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602461
Biotype: lincRNA
Gene id: ENSG00000270069
Gene Name: MIR222HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-275
0.057
1
6mer
577-597
0.005
4
6mer
543-563
0.003
1
RP11-363G2.4
hsa-miR-146a-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000445646
Biotype: lincRNA
Gene id: ENSG00000229556
Gene Name: RP11-363G2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2027-2037
0.065
0
RP11-75L1.1
hsa-miR-146a-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541404
Biotype: lincRNA
Gene id: ENSG00000256582
Gene Name: RP11-75L1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
83-98
0.064
0
AP000688.29
hsa-miR-146a-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000422473
Biotype: lincRNA
Gene id: ENSG00000233393
Gene Name: AP000688.29
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
278-297
0.054
0
6mer
643-656
0.010
0
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