LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_010279
hsa-miR-146a-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020261
Biotype: transcript isomorph
Gene id: XLOC_010279
Gene Name: XLOC_010279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2274-2286
0.057
0
7mer
285-300
0.040
0
RP1-170O19.22
hsa-miR-146a-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000467897
Biotype: processed_transcript
Gene id: ENSG00000273433
Gene Name: RP1-170O19.22
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
577-594
0.094
10
CTD-2308B18.1
hsa-miR-146a-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513422
Biotype: lincRNA
Gene id: ENSG00000251214
Gene Name: CTD-2308B18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-276
0.052
6
7mer
230-244
0.017
3
7mer
252-276
0.010
1
6mer
397-409
0.010
7
DARS-AS1
hsa-miR-146a-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601196
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
836-849
0.073
5
6mer
612-628
0.008
7
6mer
326-351
0.004
2
6mer
666-685
0.003
3
XLOC_002220
hsa-miR-146a-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004346
Biotype: transcript isomorph
Gene id: XLOC_002220
Gene Name: XLOC_002220
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-99
0.042
0
7mer
20-34
0.041
1
6mer
123-137
0.005
0
LINC01010
hsa-miR-146a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038218.1
Biotype: lincRNA
Gene id: NR_038218.1 (gene)
Gene Name: LINC01010
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1312-1339
0.063
1
7mer
28-45
0.023
0
RP11-15H20.6
hsa-miR-146a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601239
Biotype: retained_intron
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1706-1733
0.079
1
6mer
1907-1932
0.007
1
LINC01010
hsa-miR-146a-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038219.1
Biotype: lincRNA
Gene id: NR_038219.1 (gene)
Gene Name: LINC01010
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1525-1552
0.064
1
7mer
28-45
0.020
0
RP11-506O24.1
hsa-miR-146a-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421530
Biotype: antisense
Gene id: ENSG00000233693
Gene Name: RP11-506O24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1415-1442
0.084
7
AC080094.1
hsa-miR-146a-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421181
Biotype: lincRNA
Gene id: ENSG00000237670
Gene Name: AC080094.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-49
0.083
1
FLJ22763
hsa-miR-146a-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_033977.1
Biotype: lincRNA
Gene id: NR_033977.1 (gene)
Gene Name: FLJ22763
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1915-1931
0.074
1
6mer
1522-1538
0.004
1
6mer
419-444
0.002
1
XLOC_003453
hsa-miR-146a-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007983
Biotype: transcript isomorph
Gene id: XLOC_003453
Gene Name: XLOC_003453
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
274-292
0.080
5
C21orf67
hsa-miR-146a-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000615847
Biotype: lincRNA
Gene id: ENSG00000183250
Gene Name: C21orf67
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1464-1479
0.071
1
7mer
553-580
0.007
0
6mer
1095-1116
0.002
Not Conserved
CTA-292E10.9
hsa-miR-146a-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10566-10587
0.017
1
9mer
4638-4658
0.016
3
7mer
24312-24333
0.015
2
7mer
12773-12786
0.009
8
8mer
15116-15140
0.006
0
7mer
18867-18881
0.004
0
6mer
12404-12423
0.003
3
6mer
11882-11907
0.002
3
6mer
19145-19170
0.002
Not Conserved
6mer
7880-7903
0.002
8
6mer
19558-19565
0.001
0
6mer
12079-12098
0.001
1
6mer
1740-1756
0.001
1
XLOC_007822
hsa-miR-146a-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016456
Biotype: transcript isomorph
Gene id: XLOC_007822
Gene Name: XLOC_007822
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
41-59
0.077
3
RP11-565A3.2
hsa-miR-146a-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502952
Biotype: lincRNA
Gene id: ENSG00000250590
Gene Name: RP11-565A3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-285
0.076
2
LL22NC03-22D1.1
hsa-miR-146a-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3779-3801
0.025
1
8mer
513-535
0.016
1
7mer
28020-28046
0.006
1
6mer
178-203
0.005
1
7mer
23500-23518
0.005
1
6mer
28350-28369
0.003
1
6mer
18372-18388
0.002
2
6mer
2242-2254
0.002
1
6mer
21114-21140
0.002
1
6mer
7135-7153
0.002
4
6mer
17024-17047
0.002
1
6mer
23290-23311
0.002
1
6mer
23867-23887
0.001
0
6mer
8009-8029
0.001
2
6mer
12185-12210
0.001
0
ZBED5-AS1
hsa-miR-146a-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529014
Biotype: antisense
Gene id: ENSG00000247271
Gene Name: ZBED5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
686-702
0.053
1
7mer
7-31
0.021
1
RP1-134E15.3
hsa-miR-146a-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602426
Biotype: sense_intronic
Gene id: ENSG00000269919
Gene Name: RP1-134E15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
391-407
0.074
1
FLJ22763
hsa-miR-146a-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000477643
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
338-354
0.073
1
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