LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_004802
hsa-miR-146a-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010319
Biotype: transcript isomorph
Gene id: XLOC_004802
Gene Name: XLOC_004802
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
110-122
0.047
1
RP11-76I23.7
hsa-miR-146a-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000450908
Biotype: antisense
Gene id: ENSG00000231880
Gene Name: RP11-76I23.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-239
0.047
5
D21S2088E
hsa-miR-146a-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_040254.1
Biotype: lincRNA
Gene id: NR_040254.1 (gene)
Gene Name: D21S2088E
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-196
0.033
1
7mer
194-207
0.007
0
6mer
935-940
0.004
2
6mer
723-737
0.002
0
LINC00547
hsa-miR-146a-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000612438
Biotype: lincRNA
Gene id: ENSG00000275226
Gene Name: LINC00547
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-56
0.037
2
6mer
2929-2941
0.005
3
6mer
2569-2585
0.004
1
LINC01019
hsa-miR-146a-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505443
Biotype: lincRNA
Gene id: ENSG00000248118
Gene Name: LINC01019
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-75
0.025
1
7mer
2148-2173
0.008
1
6mer
28-53
0.006
1
6mer
290-314
0.003
1
6mer
1836-1857
0.002
1
7mer
2054-2070
0.001
0
6mer
1741-1755
0.001
1
XLOC_000615
hsa-miR-146a-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000418
Biotype: transcript isomorph
Gene id: XLOC_000615
Gene Name: XLOC_000615
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-389
0.028
0
8mer
502-515
0.011
1
6mer
874-891
0.007
1
AC012593.1
hsa-miR-146a-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588944
Biotype: lincRNA
Gene id: ENSG00000226994
Gene Name: AC012593.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
723-744
0.042
0
6mer
306-321
0.005
0
KCNA3
hsa-miR-146a-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000566942
Biotype: lincRNA
Gene id: ENSG00000259834
Gene Name: KCNA3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
358-373
0.024
2
6mer
175-183
0.011
7
6mer
65-87
0.007
0
6mer
515-536
0.004
2
LINC00485
hsa-miR-146a-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_033855.1
Biotype: lincRNA
Gene id: NR_033855.1 (gene)
Gene Name: LINC00485
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1010-1036
0.029
1
8mer
2289-2306
0.005
1
6mer
3411-3437
0.004
1
6mer
473-492
0.003
Not Conserved
6mer
2875-2892
0.003
1
6mer
934-953
0.001
2
6mer
1836-1853
0.001
1
LINC00442
hsa-miR-146a-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000428086
Biotype: antisense
Gene id: ENSG00000232685
Gene Name: LINC00442
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
987-1010
0.018
1
8mer+wobble
237-258
0.015
1
6mer
16-42
0.010
1
6mer
467-490
0.003
Not Conserved
XLOC_007543
hsa-miR-146a-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016147
Biotype: transcript isomorph
Gene id: XLOC_007543
Gene Name: XLOC_007543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1945-1971
0.046
4
LINC00506
hsa-miR-146a-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_047469.1
Biotype: lincRNA
Gene id: NR_047469.1 (gene)
Gene Name: LINC00506
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4140-4157
0.035
1
7mer
3296-3323
0.003
Not Conserved
7mer
2395-2413
0.002
0
7mer
2645-2671
0.002
0
6mer
2557-2575
0.002
0
7mer
2316-2337
0.001
Not Conserved
6mer
2335-2360
0.001
0
D21S2088E
hsa-miR-146a-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000262354
Biotype: lincRNA
Gene id: ENSG00000228592
Gene Name: D21S2088E
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-196
0.033
1
7mer
194-207
0.007
0
6mer
935-940
0.004
2
6mer
723-737
0.002
0
LINC00485
hsa-miR-146a-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547179
Biotype: lincRNA
Gene id: ENSG00000258169
Gene Name: LINC00485
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1013-1039
0.029
1
8mer
2292-2309
0.005
1
6mer
3414-3440
0.004
1
6mer
476-495
0.003
Not Conserved
6mer
2878-2895
0.003
1
6mer
937-956
0.001
2
6mer
1839-1856
0.001
1
RP11-417E7.2
hsa-miR-146a-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000564830
Biotype: lincRNA
Gene id: ENSG00000261039
Gene Name: RP11-417E7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
360-373
0.046
1
CTD-2170G1.2
hsa-miR-146a-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512882
Biotype: lincRNA
Gene id: ENSG00000251575
Gene Name: CTD-2170G1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-419
0.046
1
XLOC_008826
hsa-miR-146a-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018518
Biotype: transcript isomorph
Gene id: XLOC_008826
Gene Name: XLOC_008826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-83
0.036
1
6mer
4200-4226
0.005
0
6mer
3153-3174
0.005
1
LINC00442
hsa-miR-146a-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456737
Biotype: antisense
Gene id: ENSG00000232685
Gene Name: LINC00442
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
242-263
0.015
1
7mer
1021-1044
0.012
1
6mer
21-47
0.010
1
6mer
1934-1959
0.005
0
6mer
472-495
0.003
Not Conserved
RP11-147C23.1
hsa-miR-146a-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000595188
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
579-591
0.042
3
6mer
519-541
0.004
2
RP11-147L13.8
hsa-miR-146a-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591222
Biotype: lincRNA
Gene id: ENSG00000267731
Gene Name: RP11-147L13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1113-1132
0.037
0
6mer
2660-2685
0.008
0
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