LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
LINC00564
hsa-miR-145-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000567258
Biotype: lincRNA
Gene id: ENSG00000260094
Gene Name: LINC00564
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-121
0.047
2
6mer
934-954
0.006
0
LINC00870
hsa-miR-145-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473713
Biotype: lincRNA
Gene id: ENSG00000243083
Gene Name: LINC00870
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2668-2687
0.053
1
XLOC_004022
hsa-miR-145-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008532
Biotype: transcript isomorph
Gene id: XLOC_004022
Gene Name: XLOC_004022
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
480-503
0.053
1
XLOC_005311
hsa-miR-145-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011825
Biotype: transcript isomorph
Gene id: XLOC_005311
Gene Name: XLOC_005311
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-226
0.053
3
AC000099.1
hsa-miR-145-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450061
Biotype: antisense
Gene id: ENSG00000236340
Gene Name: AC000099.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
47-72
0.042
1
6mer
663-680
0.006
1
6mer
95-110
0.005
3
XLOC_006858
hsa-miR-145-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014780
Biotype: transcript isomorph
Gene id: XLOC_006858
Gene Name: XLOC_006858
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-327
0.053
3
XLOC_008480
hsa-miR-145-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017675
Biotype: transcript isomorph
Gene id: XLOC_008480
Gene Name: XLOC_008480
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
217-241
0.023
5
8mer
2321-2342
0.022
1
6mer
59-78
0.005
1
6mer
1011-1035
0.002
Not Conserved
XLOC_012891
hsa-miR-145-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026572
Biotype: transcript isomorph
Gene id: XLOC_012891
Gene Name: XLOC_012891
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-262
0.027
1
6mer
472-497
0.013
1
6mer
54-70
0.013
1
XLOC_008391
hsa-miR-145-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017789
Biotype: transcript isomorph
Gene id: XLOC_008391
Gene Name: XLOC_008391
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-123
0.052
4
RP11-598F7.3
hsa-miR-145-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540226
Biotype: antisense
Gene id: ENSG00000256948
Gene Name: RP11-598F7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-147
0.047
1
6mer
105-118
0.005
Not Conserved
RP3-355L5.5
hsa-miR-145-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606817
Biotype: lincRNA
Gene id: ENSG00000272102
Gene Name: RP3-355L5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-167
0.052
1
SNORA67
hsa-miR-145-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581621
Biotype: processed_transcript
Gene id: ENSG00000264772
Gene Name: SNORA67
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-97
0.040
9
6mer
547-561
0.003
3
6mer
2034-2047
0.003
6
6mer
4210-4236
0.003
1
6mer
3099-3116
0.002
0
6mer
2374-2400
0.001
1
MROH7-TTC4
hsa-miR-145-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037640.1
Biotype: sense
Gene id: NR_037640.1 (gene)
Gene Name: MROH7-TTC4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5877-5899
0.036
1
7mer
307-323
0.008
3
6mer
938-956
0.003
1
6mer
624-641
0.002
1
6mer
1317-1343
0.002
1
6mer
2195-2219
0.001
5
6mer
1714-1739
0.001
2
MROH7-TTC4
hsa-miR-145-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037641.1
Biotype: sense
Gene id: NR_037641.1 (gene)
Gene Name: MROH7-TTC4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5656-5678
0.036
1
7mer
307-323
0.008
3
6mer
938-956
0.003
1
6mer
624-641
0.002
1
6mer
1317-1343
0.002
1
6mer
1714-1739
0.001
2
6mer
2211-2235
0.001
5
RP11-849F2.5
hsa-miR-145-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580537
Biotype: antisense
Gene id: ENSG00000265749
Gene Name: RP11-849F2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
277-294
0.046
2
6mer
471-489
0.005
2
RP11-92F20.1
hsa-miR-145-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000620050
Biotype: antisense
Gene id: ENSG00000274629
Gene Name: RP11-92F20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
583-602
0.036
10
7mer
724-746
0.015
1
TCEB3-AS1
hsa-miR-145-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427796
Biotype: antisense
Gene id: ENSG00000236810
Gene Name: TCEB3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-30
0.044
3
7mer
434-447
0.007
1
RP11-68L1.1
hsa-miR-145-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000483759
Biotype: antisense
Gene id: ENSG00000251058
Gene Name: RP11-68L1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
92-116
0.040
2
6mer
56-71
0.007
0
6mer
391-409
0.004
1
XLOC_010462
hsa-miR-145-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022208
Biotype: transcript isomorph
Gene id: XLOC_010462
Gene Name: XLOC_010462
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-92
0.051
1
RP11-92F20.1
hsa-miR-145-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000622296
Biotype: antisense
Gene id: ENSG00000274629
Gene Name: RP11-92F20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
597-616
0.036
10
7mer
738-760
0.014
1
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