LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
TTLL11-IT1
hsa-miR-145-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000411790
Biotype: lincRNA
Gene id: ENSG00000237548
Gene Name: TTLL11-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7-29
0.059
2
RP11-266K22.2
hsa-miR-145-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430143
Biotype: antisense
Gene id: ENSG00000229044
Gene Name: RP11-266K22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-67
0.033
0
8mer
124-148
0.026
0
RP11-109G23.3
hsa-miR-145-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000564925
Biotype: antisense
Gene id: ENSG00000260278
Gene Name: RP11-109G23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1942-1961
0.023
1
8mer
784-809
0.022
4
7mer
1962-1987
0.005
1
6mer
184-200
0.005
0
6mer
243-269
0.003
1
TEX41
hsa-miR-145-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451774
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2020-2039
0.054
1
6mer
335-354
0.003
1
AC079466.1
hsa-miR-145-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587961
Biotype: lincRNA
Gene id: ENSG00000266976
Gene Name: AC079466.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2252-2272
0.024
1
8mer
2622-2639
0.021
1
6mer
3192-3214
0.008
1
6mer
3202-3224
0.003
1
6mer
2629-2644
0.001
1
RP5-1069C8.2
hsa-miR-145-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000456265
Biotype: lincRNA
Gene id: ENSG00000233048
Gene Name: RP5-1069C8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2970-2989
0.039
1
7mer
2703-2716
0.013
1
7mer
2201-2221
0.003
0
6mer
1567-1589
0.001
0
RP5-1069C8.2
hsa-miR-145-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_109868.1
Biotype: lincRNA
Gene id: NR_109868.1 (gene)
Gene Name: RP5-1069C8.2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2968-2987
0.039
1
7mer
2701-2714
0.013
1
7mer
2199-2219
0.003
0
6mer
1565-1587
0.001
0
BDNF-AS
hsa-miR-145-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_002832.2
Biotype: antisense
Gene id: NR_002832.2 (gene)
Gene Name: BDNF-AS
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1450-1471
0.051
7
6mer
409-425
0.003
2
6mer
1565-1590
0.002
1
XLOC_010754
hsa-miR-145-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022389
Biotype: transcript isomorph
Gene id: XLOC_010754
Gene Name: XLOC_010754
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-40
0.035
1
7mer
258-284
0.015
1
7mer
876-888
0.004
0
6mer
1574-1597
0.003
3
BDNF-AS
hsa-miR-145-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499008
Biotype: antisense
Gene id: ENSG00000245573
Gene Name: BDNF-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1450-1471
0.051
7
6mer
409-425
0.003
2
6mer
1565-1590
0.002
1
RP5-1120P11.1
hsa-miR-145-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422059
Biotype: antisense
Gene id: ENSG00000237686
Gene Name: RP5-1120P11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
441-448
0.042
1
9mer
2165-2187
0.012
1
6mer
1109-1130
0.002
2
LINC00662
hsa-miR-145-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000561521
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-17
0.039
Not Conserved
8mer
684-704
0.018
Not Conserved
RP11-705C15.3
hsa-miR-145-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537616
Biotype: sense_intronic
Gene id: ENSG00000257027
Gene Name: RP11-705C15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
698-719
0.038
1
7mer
1032-1049
0.008
1
6mer
223-246
0.006
0
6mer
1604-1621
0.005
1
RP11-266K4.14
hsa-miR-145-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000618256
Biotype: lincRNA
Gene id: ENSG00000275367
Gene Name: RP11-266K4.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
204-220
0.030
1
6mer
776-783
0.012
1
6mer
3323-3340
0.007
0
7mer
2140-2158
0.005
0
6mer
54-75
0.002
Not Conserved
TTTY20
hsa-miR-145-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000434487
Biotype: antisense
Gene id: ENSG00000232808
Gene Name: TTTY20
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
124-132
0.056
0
XLOC_013657
hsa-miR-145-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028007
Biotype: transcript isomorph
Gene id: XLOC_013657
Gene Name: XLOC_013657
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3276-3295
0.039
1
7mer
3009-3022
0.013
1
7mer
2234-2254
0.002
0
6mer
1567-1589
0.001
0
RP11-400K9.4
hsa-miR-145-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000426023
Biotype: lincRNA
Gene id: ENSG00000237807
Gene Name: RP11-400K9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2086-2102
0.048
1
6mer
1877-1899
0.006
1
6mer
1721-1746
0.003
0
RP11-25I9.3
hsa-miR-145-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000366160
Biotype: pseudogene
Gene id: ENSG00000203334
Gene Name: RP11-25I9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-151
0.041
1
6mer
1542-1552
0.006
4
6mer
223-227
0.006
1
6mer
1075-1098
0.003
2
CTBP1-AS2
hsa-miR-145-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505364
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
966-989
0.030
1
7mer
2217-2242
0.025
1
RP11-25I9.3
hsa-miR-145-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000615020
Biotype: lincRNA
Gene id: ENSG00000203334
Gene Name: RP11-25I9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-151
0.041
1
6mer
1545-1555
0.006
4
6mer
223-227
0.006
1
6mer
1075-1098
0.003
2
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