LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
DKFZp434L192
hsa-miR-145-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_026929.1
Biotype: lincRNA
Gene id: NR_026929.1 (gene)
Gene Name: DKFZp434L192
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
812-819
0.062
1
7mer
1029-1054
0.021
Not Conserved
LINC01278
hsa-miR-145-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000608623
Biotype: retained_intron
Gene id: ENSG00000235437
Gene Name: LINC01278
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
804-825
0.048
1
9mer
4334-4347
0.018
Not Conserved
8mer
3038-3051
0.007
Not Conserved
6mer
793-807
0.005
1
6mer
946-956
0.004
0
6mer
1821-1836
0.001
Not Conserved
AC009299.2
hsa-miR-145-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435692
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-115
0.082
12
AC099552.4
hsa-miR-145-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000404289
Biotype: lincRNA
Gene id: ENSG00000217825
Gene Name: AC099552.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-76
0.053
0
7mer
201-213
0.022
1
6mer
66-79
0.007
0
NR2F1-AS1
hsa-miR-145-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607797
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-32
0.045
1
8mer
457-471
0.029
1
6mer
248-266
0.005
1
6mer
2062-2083
0.002
1
XLOC_003461
hsa-miR-145-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007998
Biotype: transcript isomorph
Gene id: XLOC_003461
Gene Name: XLOC_003461
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-160
0.078
9
RP1-257I9.2
hsa-miR-145-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000453579
Biotype: lincRNA
Gene id: ENSG00000232529
Gene Name: RP1-257I9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-28
0.052
1
9mer
454-470
0.026
2
LINC01089
hsa-miR-145-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000543167
Biotype: lincRNA
Gene id: ENSG00000212694
Gene Name: LINC01089
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
622-641
0.076
9
6mer
237-255
0.002
1
DKFZp434L192
hsa-miR-145-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000566570
Biotype: lincRNA
Gene id: ENSG00000261275
Gene Name: DKFZp434L192
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3911-3918
0.043
1
7mer
4128-4153
0.018
Not Conserved
7mer
3011-3035
0.012
1
6mer
1686-1706
0.002
1
6mer
1558-1580
0.002
1
MIR6818
hsa-miR-145-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26398-26410
0.009
0
8mer
39385-39405
0.008
0
7mer
4219-4238
0.005
0
7mer
10678-10693
0.004
1
7mer
46727-46747
0.003
5
7mer
3811-3835
0.003
1
7mer
8768-8790
0.003
1
8mer+wobble
34896-34917
0.003
1
6mer
1000-1023
0.003
2
6mer
42051-42075
0.002
5
6mer
48501-48515
0.002
2
7mer
35547-35554
0.002
Not Conserved
6mer
16276-16298
0.002
4
6mer
41856-41877
0.002
6
7mer
46704-46728
0.002
8
6mer
48461-48482
0.002
3
6mer
4407-4417
0.002
0
8mer
8256-8280
0.002
0
6mer
24198-24212
0.002
3
6mer
15476-15486
0.002
4
6mer
1334-1361
0.002
2
6mer
14204-14221
0.002
1
6mer
10824-10841
0.001
0
6mer
24986-25008
0.001
1
6mer
35345-35371
0.001
1
6mer
8274-8301
0.001
0
6mer
16944-16965
0.001
1
6mer
42617-42637
0.001
0
6mer
11868-11894
0.001
0
RP11-143E21.3
hsa-miR-145-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611525
Biotype: lincRNA
Gene id: ENSG00000276122
Gene Name: RP11-143E21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1967-1980
0.042
2
8mer
1730-1750
0.023
1
7mer
102-121
0.010
1
RP11-269F21.3
hsa-miR-145-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511219
Biotype: lincRNA
Gene id: ENSG00000249815
Gene Name: RP11-269F21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
413-438
0.074
0
AC006548.28
hsa-miR-145-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
8328-8340
0.010
1
7mer
700-726
0.009
1
8mer
48659-48672
0.005
Not Conserved
6mer
13656-13681
0.004
9
7mer
7178-7203
0.003
1
8mer
47756-47766
0.003
Not Conserved
6mer
73161-73175
0.003
1
7mer
58588-58610
0.003
1
7mer
15002-15022
0.002
0
7mer
8678-8698
0.002
0
6mer
36305-36326
0.002
1
6mer
942-951
0.002
Not Conserved
6mer
34991-35012
0.002
1
6mer
40400-40413
0.002
1
6mer
43171-43190
0.002
1
6mer
5997-6010
0.002
1
6mer
25828-25842
0.002
1
6mer
49297-49312
0.002
Not Conserved
6mer
10152-10164
0.002
0
6mer
19382-19392
0.002
1
6mer
18492-18516
0.001
5
6mer
45250-45276
0.001
1
6mer
77570-77581
0.001
0
6mer
38353-38379
0.001
3
6mer
32753-32771
0.001
1
6mer
81846-81872
0.001
1
6mer
6795-6805
0.001
1
6mer
34925-34944
0.001
1
6mer
60791-60817
0.001
1
6mer
32746-32771
0.000
1
6mer
81780-81805
0.000
1
6mer
19354-19372
0.000
2
6mer
8637-8661
0.000
1
AC007277.3
hsa-miR-145-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428156
Biotype: antisense
Gene id: ENSG00000213981
Gene Name: AC007277.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-106
0.055
1
8mer
497-509
0.017
1
RP4-598P13.1
hsa-miR-145-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000502413
Biotype: antisense
Gene id: ENSG00000248458
Gene Name: RP4-598P13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1129-1149
0.035
7
8mer
632-647
0.026
0
8mer
304-314
0.010
1
FAM53B-AS1
hsa-miR-145-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000432699
Biotype: antisense
Gene id: ENSG00000233334
Gene Name: FAM53B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
519-543
0.070
4
XLOC_010602
hsa-miR-145-5p
0.972
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022278
Biotype: transcript isomorph
Gene id: XLOC_010602
Gene Name: XLOC_010602
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-232
0.038
2
8mer
46-58
0.030
1
LINC01287
hsa-miR-145-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000416982
Biotype: lincRNA
Gene id: ENSG00000234722
Gene Name: LINC01287
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-365
0.044
0
7mer
826-852
0.016
0
6mer
921-942
0.008
0
CECR7
hsa-miR-145-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000441006
Biotype: lincRNA
Gene id: ENSG00000237438
Gene Name: CECR7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2379-2394
0.042
1
6mer
2244-2260
0.009
1
7mer
1086-1106
0.006
1
7mer
1251-1275
0.005
1
6mer
66-91
0.005
1
6mer
2257-2269
0.003
0
RP11-231G3.1
hsa-miR-145-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607723
Biotype: lincRNA
Gene id: ENSG00000272308
Gene Name: RP11-231G3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
377-393
0.065
4
6mer
429-439
0.003
Not Conserved
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