LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
PCAT29
hsa-miR-145-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558411
Biotype: lincRNA
Gene id: ENSG00000259641
Gene Name: PCAT29
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
650-670
0.038
4
6mer
760-783
0.002
1
XLOC_008507
hsa-miR-145-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017839
Biotype: transcript isomorph
Gene id: XLOC_008507
Gene Name: XLOC_008507
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-121
0.040
1
DNM3OS
hsa-miR-145-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417354
Biotype: antisense
Gene id: ENSG00000230630
Gene Name: DNM3OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4026-4053
0.024
9
7mer
1330-1340
0.006
4
7mer
608-634
0.004
1
6mer
3442-3459
0.004
2
6mer
2366-2379
0.002
8
RP11-398J10.2
hsa-miR-145-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000554412
Biotype: lincRNA
Gene id: ENSG00000258489
Gene Name: RP11-398J10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
853-875
0.040
11
RP11-221J22.1
hsa-miR-145-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465215
Biotype: lincRNA
Gene id: ENSG00000214407
Gene Name: RP11-221J22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
886-904
0.022
0
8mer
210-218
0.015
1
6mer
1289-1313
0.002
1
6mer
1305-1317
0.001
1
PWRN1
hsa-miR-145-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565893
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
311-334
0.036
1
6mer
61-75
0.004
0
XLOC_003894
hsa-miR-145-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008443
Biotype: transcript isomorph
Gene id: XLOC_003894
Gene Name: XLOC_003894
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
97-117
0.029
1
6mer
143-166
0.006
1
6mer
25-42
0.005
1
RP11-290F5.2
hsa-miR-145-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_040108.1
Biotype: lincRNA
Gene id: NR_040108.1 (gene)
Gene Name: RP11-290F5.2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-372
0.037
1
6mer
1837-1849
0.003
1
DNM3OS
hsa-miR-145-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103486.1
Biotype: antisense
Gene id: NR_103486.1 (gene)
Gene Name: DNM3OS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3678-3705
0.021
9
7mer
982-992
0.008
4
7mer
260-286
0.005
1
6mer
3094-3111
0.003
2
6mer
2018-2031
0.002
8
CTD-2017D11.1
hsa-miR-145-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594934
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
500-521
0.026
1
6mer
217-237
0.014
1
CTD-2337A12.1
hsa-miR-145-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513158
Biotype: antisense
Gene id: ENSG00000251314
Gene Name: CTD-2337A12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
316-340
0.021
2
8mer
323-347
0.018
1
CTA-221G9.11
hsa-miR-145-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623422
Biotype: lincRNA
Gene id: ENSG00000279298
Gene Name: CTA-221G9.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
221-238
0.037
0
6mer
110-135
0.002
Not Conserved
MIR222HG
hsa-miR-145-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602507
Biotype: lincRNA
Gene id: ENSG00000270069
Gene Name: MIR222HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1573-1588
0.040
8
PLCE1-AS2
hsa-miR-145-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000432782
Biotype: antisense
Gene id: ENSG00000232913
Gene Name: PLCE1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-286
0.034
1
6mer
152-178
0.006
4
SOX2-OT
hsa-miR-145-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000594942
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-463
0.040
1
XLOC_003734
hsa-miR-145-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008904
Biotype: transcript isomorph
Gene id: XLOC_003734
Gene Name: XLOC_003734
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
177-203
0.035
6
6mer
1199-1223
0.003
2
6mer
1917-1937
0.002
0
XLOC_007078
hsa-miR-145-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014998
Biotype: transcript isomorph
Gene id: XLOC_007078
Gene Name: XLOC_007078
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
754-770
0.025
1
6mer
112-136
0.015
1
RP1-293L8.2
hsa-miR-145-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000423208
Biotype: lincRNA
Gene id: ENSG00000224506
Gene Name: RP1-293L8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
488-502
0.040
4
LINC00348
hsa-miR-145-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000428761
Biotype: lincRNA
Gene id: ENSG00000226846
Gene Name: LINC00348
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
662-682
0.040
2
FLJ37035
hsa-miR-145-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_033847.1
Biotype: lincRNA
Gene id: NR_033847.1 (gene)
Gene Name: FLJ37035
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
458-482
0.035
2
6mer
2324-2341
0.005
1
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