LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
XLOC_008538
hsa-miR-145-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018256
Biotype: transcript isomorph
Gene id: XLOC_008538
Gene Name: XLOC_008538
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
993-1003
0.036
2
6mer
332-352
0.006
0
RP11-457M11.7
hsa-miR-145-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000616994
Biotype: lincRNA
Gene id: ENSG00000275846
Gene Name: RP11-457M11.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1942-1948
0.019
2
8mer
1229-1237
0.010
Not Conserved
7mer
2205-2230
0.007
1
6mer
281-305
0.004
1
6mer
2036-2046
0.002
1
RP11-662M24.1
hsa-miR-145-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000591364
Biotype: lincRNA
Gene id: ENSG00000256343
Gene Name: RP11-662M24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-102
0.042
0
RP11-462P6.1
hsa-miR-145-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558948
Biotype: lincRNA
Gene id: ENSG00000259447
Gene Name: RP11-462P6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-51
0.034
1
6mer
132-148
0.008
1
RP3-523C21.2
hsa-miR-145-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000440246
Biotype: lincRNA
Gene id: ENSG00000236166
Gene Name: RP3-523C21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
110-118
0.039
1
6mer
180-205
0.004
1
TTN-AS1
hsa-miR-145-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589487
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
636-654
0.036
1
6mer
1050-1061
0.006
7
RP11-354M20.3
hsa-miR-145-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000595446
Biotype: antisense
Gene id: ENSG00000231104
Gene Name: RP11-354M20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
715-741
0.042
9
SENP3-EIF4A1
hsa-miR-145-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037926.1
Biotype: sense
Gene id: NR_037926.1 (gene)
Gene Name: SENP3-EIF4A1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2624-2644
0.014
9
6mer
4116-4129
0.009
6
6mer
718-727
0.007
9
6mer
963-987
0.003
7
6mer
268-280
0.003
2
6mer
1789-1813
0.002
6
6mer
3094-3108
0.002
3
6mer
308-334
0.001
4
AC002456.2
hsa-miR-145-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415965
Biotype: antisense
Gene id: ENSG00000223969
Gene Name: AC002456.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
110-117
0.042
1
XLOC_012643
hsa-miR-145-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026299
Biotype: transcript isomorph
Gene id: XLOC_012643
Gene Name: XLOC_012643
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
615-640
0.034
2
6mer
115-131
0.008
2
XLOC_013274
hsa-miR-145-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1607-1630
0.008
1
6mer
3167-3191
0.007
1
6mer
2096-2118
0.006
1
6mer
1175-1186
0.005
1
7mer
2763-2783
0.005
0
7mer
2838-2857
0.004
0
6mer
4998-5017
0.003
0
6mer
4288-4314
0.002
0
6mer
3408-3420
0.001
Not Conserved
XLOC_000746
hsa-miR-145-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001430
Biotype: transcript isomorph
Gene id: XLOC_000746
Gene Name: XLOC_000746
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
392-418
0.031
1
7mer
989-1014
0.004
0
6mer
1012-1030
0.003
0
7mer
3027-3045
0.003
0
6mer
1996-2015
0.001
0
XLOC_006324
hsa-miR-145-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013664
Biotype: transcript isomorph
Gene id: XLOC_006324
Gene Name: XLOC_006324
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
661-667
0.041
0
AC004540.4
hsa-miR-145-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451368
Biotype: antisense
Gene id: ENSG00000225792
Gene Name: AC004540.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
344-359
0.041
9
XLOC_004915
hsa-miR-145-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010981
Biotype: transcript isomorph
Gene id: XLOC_004915
Gene Name: XLOC_004915
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
381-407
0.022
0
6mer
226-250
0.019
0
RP11-536C10.7
hsa-miR-145-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046104.1
Biotype: lincRNA
Gene id: NR_046104.1 (gene)
Gene Name: RP11-536C10.7
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
475-500
0.023
0
7mer
592-616
0.014
0
6mer
374-393
0.004
0
XLOC_001716
hsa-miR-145-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003910
Biotype: transcript isomorph
Gene id: XLOC_001716
Gene Name: XLOC_001716
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1285-1309
0.024
6
7mer
477-497
0.017
2
XLOC_001068
hsa-miR-145-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000653
Biotype: transcript isomorph
Gene id: XLOC_001068
Gene Name: XLOC_001068
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
269-277
0.024
2
7mer
34-51
0.012
0
6mer
254-278
0.004
0
FLG-AS1
hsa-miR-145-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000392688
Biotype: antisense
Gene id: ENSG00000237975
Gene Name: FLG-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2775-2794
0.027
1
8mer
1470-1489
0.005
1
6mer
270-291
0.004
1
6mer
543-569
0.003
1
6mer
1702-1720
0.001
1
6mer
1559-1582
0.001
2
RP11-94B19.4
hsa-miR-145-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577797
Biotype: lincRNA
Gene id: ENSG00000266614
Gene Name: RP11-94B19.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
419-429
0.035
0
6mer
153-176
0.005
2
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