LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
RP11-141M1.3
hsa-miR-145-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000437698
Biotype: lincRNA
Gene id: ENSG00000230490
Gene Name: RP11-141M1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
290-304
0.038
6
6mer
132-154
0.005
0
XLOC_002859
hsa-miR-145-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005435
Biotype: transcript isomorph
Gene id: XLOC_002859
Gene Name: XLOC_002859
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
130-153
0.041
9
6mer
1135-1156
0.002
1
RP11-267A15.3
hsa-miR-145-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505567
Biotype: lincRNA
Gene id: ENSG00000250256
Gene Name: RP11-267A15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
411-436
0.032
Not Conserved
7mer
252-265
0.011
1
RP11-71N10.1
hsa-miR-145-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467198
Biotype: lincRNA
Gene id: ENSG00000239922
Gene Name: RP11-71N10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
131-154
0.041
9
6mer
1136-1157
0.002
1
XLOC_013845
hsa-miR-145-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028472
Biotype: transcript isomorph
Gene id: XLOC_013845
Gene Name: XLOC_013845
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-88
0.012
2
8mer
1231-1257
0.008
0
8mer
1168-1194
0.005
0
8mer
1105-1131
0.005
0
6mer
485-504
0.005
1
8mer
1042-1068
0.005
0
8mer
979-1005
0.004
0
CTC-338M12.4
hsa-miR-145-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000599439
Biotype: retained_intron
Gene id: ENSG00000233937
Gene Name: CTC-338M12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1499-1514
0.024
1
8mer
264-274
0.019
0
XLOC_008531
hsa-miR-145-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017676
Biotype: transcript isomorph
Gene id: XLOC_008531
Gene Name: XLOC_008531
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1194-1217
0.030
6
8mer
935-952
0.014
3
HLA-F-AS1
hsa-miR-145-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434086
Biotype: processed_transcript
Gene id: ENSG00000214922
Gene Name: HLA-F-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
385-403
0.028
1
6mer
96-119
0.016
1
AC107070.1
hsa-miR-145-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_037881.1
Biotype: lincRNA
Gene id: NR_037881.1 (gene)
Gene Name: AC107070.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1800-1807
0.026
1
9mer
669-679
0.015
1
6mer
649-671
0.003
1
XLOC_009894
hsa-miR-145-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020578
Biotype: transcript isomorph
Gene id: XLOC_009894
Gene Name: XLOC_009894
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-153
0.023
0
8mer
404-430
0.015
0
6mer
108-129
0.005
0
RP11-87E22.1
hsa-miR-145-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522805
Biotype: sense_intronic
Gene id: ENSG00000253142
Gene Name: RP11-87E22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-358
0.038
1
6mer
806-822
0.005
2
ZNF503-AS1
hsa-miR-145-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000524517
Biotype: lincRNA
Gene id: ENSG00000226051
Gene Name: ZNF503-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
127-143
0.022
0
6mer
522-530
0.021
10
RP11-846C15.2
hsa-miR-145-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589845
Biotype: antisense
Gene id: ENSG00000267101
Gene Name: RP11-846C15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-157
0.043
7
RP11-159D12.2
hsa-miR-145-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577267
Biotype: lincRNA
Gene id: ENSG00000264112
Gene Name: RP11-159D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3362-3377
0.023
1
8mer
854-877
0.010
2
6mer
4011-4028
0.007
2
7mer
1231-1252
0.004
1
RP11-320M16.2
hsa-miR-145-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556520
Biotype: antisense
Gene id: ENSG00000258580
Gene Name: RP11-320M16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
362-384
0.043
0
RP11-773H22.4
hsa-miR-145-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588211
Biotype: antisense
Gene id: ENSG00000266969
Gene Name: RP11-773H22.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
243-261
0.035
9
6mer
320-335
0.008
9
HAS2-AS1
hsa-miR-145-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522197
Biotype: antisense
Gene id: ENSG00000248690
Gene Name: HAS2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
549-561
0.043
1
LINC01304
hsa-miR-145-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454455
Biotype: lincRNA
Gene id: ENSG00000237401
Gene Name: LINC01304
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1800-1807
0.025
1
9mer
669-679
0.015
1
6mer
649-671
0.003
1
RP5-1014D13.2
hsa-miR-145-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19355-19366
0.021
1
8mer
1262-1283
0.011
1
6mer
1876-1888
0.004
11
6mer
18465-18482
0.002
1
6mer
3067-3078
0.001
Not Conserved
6mer
17595-17616
0.001
1
6mer
13903-13920
0.001
0
6mer
13589-13606
0.001
1
6mer
17908-17926
0.001
1
XLOC_010575
hsa-miR-145-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021974
Biotype: transcript isomorph
Gene id: XLOC_010575
Gene Name: XLOC_010575
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
532-550
0.036
1
6mer
2645-2664
0.006
1
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