LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
RP11-386D6.2
hsa-miR-145-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520649
Biotype: lincRNA
Gene id: ENSG00000253778
Gene Name: RP11-386D6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
470-497
0.029
0
7mer
429-442
0.013
1
6mer
340-358
0.003
0
LINC00348
hsa-miR-145-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_047699.1
Biotype: lincRNA
Gene id: NR_047699.1 (gene)
Gene Name: LINC00348
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
557-577
0.045
2
BDNF-AS
hsa-miR-145-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_033312.1
Biotype: antisense
Gene id: NR_033312.1 (gene)
Gene Name: BDNF-AS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1101-1122
0.040
7
6mer
340-356
0.004
2
6mer
1216-1241
0.002
1
MIR4534
hsa-miR-145-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32413-32436
0.008
3
6mer
444-462
0.005
5
8mer
44518-44530
0.004
0
7mer
17046-17057
0.003
1
6mer
52013-52028
0.002
5
6mer
7155-7165
0.002
0
6mer
27346-27367
0.002
1
6mer
47132-47151
0.002
Not Conserved
6mer
39434-39460
0.002
0
6mer
37443-37466
0.002
4
6mer
52918-52941
0.002
2
6mer
40334-40338
0.001
1
6mer
42722-42742
0.001
1
6mer
53153-53174
0.001
0
6mer
50071-50095
0.001
1
6mer
23235-23247
0.001
Not Conserved
6mer
1795-1811
0.001
Not Conserved
6mer
33839-33861
0.001
1
6mer
18530-18554
0.001
0
6mer
52267-52281
0.001
1
6mer
42317-42333
0.001
2
6mer
27484-27509
0.001
0
7mer
40487-40505
0.000
0
TUG1
hsa-miR-145-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000540687
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
715-735
0.030
8
6mer
84-109
0.007
5
7mer
1580-1601
0.006
5
6mer
914-932
0.002
1
RP11-93G5.1
hsa-miR-145-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617568
Biotype: lincRNA
Gene id: ENSG00000274317
Gene Name: RP11-93G5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4687-4705
0.037
1
6mer
4243-4247
0.004
1
6mer
1053-1066
0.002
1
6mer
2615-2639
0.001
1
6mer
2761-2772
0.001
1
XLOC_005457
hsa-miR-145-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011367
Biotype: transcript isomorph
Gene id: XLOC_005457
Gene Name: XLOC_005457
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
488-502
0.045
4
BDNF-AS
hsa-miR-145-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499568
Biotype: antisense
Gene id: ENSG00000245573
Gene Name: BDNF-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1101-1122
0.039
7
6mer
340-356
0.004
2
6mer
1216-1241
0.002
1
RP11-380P13.1
hsa-miR-145-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514290
Biotype: antisense
Gene id: ENSG00000250137
Gene Name: RP11-380P13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-176
0.045
1
CTC-137K3.1
hsa-miR-145-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602328
Biotype: sense_intronic
Gene id: ENSG00000270137
Gene Name: CTC-137K3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
544-567
0.045
1
AC023137.2
hsa-miR-145-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000448241
Biotype: lincRNA
Gene id: ENSG00000228950
Gene Name: AC023137.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-48
0.044
6
RP11-221J22.2
hsa-miR-145-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000483840
Biotype: lincRNA
Gene id: ENSG00000241280
Gene Name: RP11-221J22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
723-741
0.026
0
8mer
47-55
0.014
1
6mer
1126-1150
0.002
1
6mer
1142-1154
0.001
1
RP11-469M7.1
hsa-miR-145-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000568571
Biotype: lincRNA
Gene id: ENSG00000260006
Gene Name: RP11-469M7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2482-2495
0.035
3
8mer
1521-1529
0.009
2
RP11-152H18.4
hsa-miR-145-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534169
Biotype: antisense
Gene id: ENSG00000254900
Gene Name: RP11-152H18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
199-221
0.044
1
XLOC_007663
hsa-miR-145-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016287
Biotype: transcript isomorph
Gene id: XLOC_007663
Gene Name: XLOC_007663
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-131
0.044
1
XLOC_000814
hsa-miR-145-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002376
Biotype: transcript isomorph
Gene id: XLOC_000814
Gene Name: XLOC_000814
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-37
0.044
0
XLOC_004366
hsa-miR-145-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009941
Biotype: transcript isomorph
Gene id: XLOC_004366
Gene Name: XLOC_004366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
829-835
0.017
0
9mer
11059-11074
0.013
1
6mer
13472-13486
0.004
1
6mer
11821-11838
0.002
1
6mer
6527-6548
0.002
0
6mer
2040-2063
0.002
1
7mer
7113-7123
0.001
0
6mer
6823-6846
0.001
0
6mer
6966-6992
0.001
0
AF196972.9
hsa-miR-145-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000445586
Biotype: antisense
Gene id: ENSG00000224292
Gene Name: AF196972.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
443-460
0.037
3
6mer
112-116
0.007
3
CTD-2541M15.4
hsa-miR-145-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607697
Biotype: lincRNA
Gene id: ENSG00000271927
Gene Name: CTD-2541M15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1733-1760
0.044
1
LINC00472
hsa-miR-145-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000436803
Biotype: lincRNA
Gene id: ENSG00000233237
Gene Name: LINC00472
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
41-60
0.037
1
6mer
269-290
0.007
4
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