LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
XLOC_010268
hsa-miR-145-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021007
Biotype: transcript isomorph
Gene id: XLOC_010268
Gene Name: XLOC_010268
UCSC graphic: -
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
546-571
0.038
1
7mer
259-283
0.006
0
6mer
426-443
0.002
1
XLOC_010009
hsa-miR-145-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020710
Biotype: transcript isomorph
Gene id: XLOC_010009
Gene Name: XLOC_010009
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
106-129
0.017
1
6mer
8-20
0.014
0
6mer
308-322
0.009
0
6mer
271-296
0.007
0
XLOC_000326
hsa-miR-145-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001083
Biotype: transcript isomorph
Gene id: XLOC_000326
Gene Name: XLOC_000326
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-31
0.031
1
6mer
112-135
0.010
3
6mer
279-297
0.006
1
CTC-369A16.2
hsa-miR-145-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510004
Biotype: lincRNA
Gene id: ENSG00000251421
Gene Name: CTC-369A16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
212-228
0.041
3
6mer
38-50
0.005
1
XLOC_005763
hsa-miR-145-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012210
Biotype: transcript isomorph
Gene id: XLOC_005763
Gene Name: XLOC_005763
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1126-1145
0.047
1
RP11-380P13.1
hsa-miR-145-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000499715
Biotype: antisense
Gene id: ENSG00000250137
Gene Name: RP11-380P13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
291-311
0.046
1
RP11-767N6.7
hsa-miR-145-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430643
Biotype: sense_intronic
Gene id: ENSG00000230896
Gene Name: RP11-767N6.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14-29
0.046
1
RP11-515O17.2
hsa-miR-145-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574716
Biotype: antisense
Gene id: ENSG00000263096
Gene Name: RP11-515O17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
448-473
0.040
1
6mer
1328-1353
0.003
0
6mer
1324-1336
0.003
0
RP11-161H23.5
hsa-miR-145-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550468
Biotype: antisense
Gene id: ENSG00000258232
Gene Name: RP11-161H23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
273-296
0.046
12
XLOC_005213
hsa-miR-145-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011165
Biotype: transcript isomorph
Gene id: XLOC_005213
Gene Name: XLOC_005213
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1609-1615
0.020
2
8mer
896-904
0.013
Not Conserved
7mer
1872-1897
0.007
1
6mer
58-79
0.004
2
6mer
1703-1713
0.002
1
RP11-457M11.7
hsa-miR-145-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000611708
Biotype: lincRNA
Gene id: ENSG00000275846
Gene Name: RP11-457M11.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1609-1615
0.020
2
8mer
896-904
0.013
Not Conserved
7mer
1872-1897
0.007
1
6mer
58-79
0.004
2
6mer
1703-1713
0.002
1
RP11-826N14.4
hsa-miR-145-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510029
Biotype: lincRNA
Gene id: ENSG00000251623
Gene Name: RP11-826N14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
421-440
0.046
1
PAX8-AS1
hsa-miR-145-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000555766
Biotype: retained_intron
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1473-1495
0.043
3
6mer
1245-1263
0.003
1
RP11-154H23.3
hsa-miR-145-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000604491
Biotype: lincRNA
Gene id: ENSG00000270562
Gene Name: RP11-154H23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1711-1734
0.021
6
8mer
2091-2109
0.019
1
6mer
1103-1118
0.006
5
SOX2-OT
hsa-miR-145-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595313
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
684-703
0.046
1
XLOC_011747
hsa-miR-145-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024430
Biotype: transcript isomorph
Gene id: XLOC_011747
Gene Name: XLOC_011747
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
639-655
0.024
1
8mer
121-133
0.022
0
RP11-5C23.1
hsa-miR-145-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608064
Biotype: antisense
Gene id: ENSG00000272760
Gene Name: RP11-5C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
279-285
0.045
1
LINC01224
hsa-miR-145-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600643
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2144-2165
0.015
1
6mer
573-597
0.011
1
6mer
429-448
0.006
0
6mer
2180-2190
0.006
0
6mer
767-793
0.005
0
6mer
1721-1741
0.002
Not Conserved
RP11-309L24.4
hsa-miR-145-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609480
Biotype: lincRNA
Gene id: ENSG00000272899
Gene Name: RP11-309L24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
170-190
0.043
6
6mer
1902-1915
0.002
1
AC002456.2
hsa-miR-145-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000441971
Biotype: antisense
Gene id: ENSG00000223969
Gene Name: AC002456.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-113
0.042
1
6mer
297-324
0.003
1
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