LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133a-3p


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Gene
miRNA
Score
DIANA Links
RP11-661A12.12
hsa-miR-133a-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524808
Biotype: antisense
Gene id: ENSG00000254812
Gene Name: RP11-661A12.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-108
0.050
1
RP11-425M5.7
hsa-miR-133a-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620327
Biotype: sense_intronic
Gene id: ENSG00000276603
Gene Name: RP11-425M5.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
229-252
0.043
1
6mer
241-264
0.006
6
XLOC_009740
hsa-miR-133a-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020413
Biotype: transcript isomorph
Gene id: XLOC_009740
Gene Name: XLOC_009740
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-462
0.038
4
8mer+wobble
414-437
0.007
1
6mer
545-558
0.004
1
XLOC_004445
hsa-miR-133a-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009252
Biotype: transcript isomorph
Gene id: XLOC_004445
Gene Name: XLOC_004445
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1976-2000
0.027
0
7mer
304-309
0.009
Not Conserved
7mer
341-356
0.006
1
6mer
560-583
0.003
1
6mer
1643-1662
0.003
3
TTN-AS1
hsa-miR-133a-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585487
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
712-732
0.049
1
LINC01127
hsa-miR-133a-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_103791.1
Biotype: lincRNA
Gene id: NR_103791.1 (gene)
Gene Name: LINC01127
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
941-948
0.044
1
6mer
975-979
0.005
Not Conserved
RP11-1109M24.16
hsa-miR-133a-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578977
Biotype: lincRNA
Gene id: ENSG00000263609
Gene Name: RP11-1109M24.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
647-667
0.041
0
6mer
382-401
0.008
0
XLOC_002446
hsa-miR-133a-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004541
Biotype: transcript isomorph
Gene id: XLOC_002446
Gene Name: XLOC_002446
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
333-348
0.049
1
LINC00682
hsa-miR-133a-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000498940
Biotype: lincRNA
Gene id: ENSG00000245870
Gene Name: LINC00682
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-65
0.031
9
6mer
27-46
0.013
10
6mer
429-449
0.005
0
AL163953.2
hsa-miR-133a-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000436530
Biotype: lincRNA
Gene id: ENSG00000225680
Gene Name: AL163953.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
504-525
0.042
10
6mer
246-263
0.006
2
TSIX
hsa-miR-133a-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26636-26651
0.007
1
6mer
36752-36774
0.006
1
7mer
6907-6929
0.006
0
7mer
27958-27973
0.004
2
8mer+wobble
16698-16719
0.003
0
6mer
17535-17548
0.002
1
6mer
33765-33786
0.002
3
6mer
29395-29417
0.002
1
6mer
2594-2603
0.002
2
6mer
26368-26373
0.002
1
6mer
17687-17710
0.002
1
6mer
9263-9285
0.002
1
6mer
3855-3882
0.002
0
6mer
31227-31231
0.001
Not Conserved
6mer
11456-11461
0.001
Not Conserved
6mer
20570-20590
0.001
Not Conserved
6mer
30876-30894
0.001
1
6mer
18660-18673
0.001
1
8mer+wobble
24491-24509
0.001
0
6mer
16830-16846
0.001
0
6mer
20609-20628
0.001
2
CTC-499B15.7
hsa-miR-133a-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589227
Biotype: antisense
Gene id: ENSG00000267646
Gene Name: CTC-499B15.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
839-856
0.034
0
6mer
49-68
0.010
0
6mer
1804-1808
0.005
0
TTN-AS1
hsa-miR-133a-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589434
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
692-712
0.038
1
6mer
743-761
0.011
12
LINC00692
hsa-miR-133a-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451284
Biotype: lincRNA
Gene id: ENSG00000230891
Gene Name: LINC00692
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-49
0.031
0
6mer
751-766
0.006
1
6mer
245-257
0.006
1
6mer
513-523
0.006
1
CTD-2031P19.5
hsa-miR-133a-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000576302
Biotype: antisense
Gene id: ENSG00000262211
Gene Name: CTD-2031P19.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-279
0.048
5
XLOC_007800
hsa-miR-133a-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016434
Biotype: transcript isomorph
Gene id: XLOC_007800
Gene Name: XLOC_007800
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
952-975
0.042
1
7mer
1330-1346
0.004
1
6mer
1993-2008
0.002
1
RP11-96C23.5
hsa-miR-133a-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000433214
Biotype: processed_transcript
Gene id: ENSG00000271880
Gene Name: RP11-96C23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
390-415
0.040
0
6mer
181-198
0.005
1
6mer
887-912
0.003
0
XLOC_009097
hsa-miR-133a-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019875
Biotype: transcript isomorph
Gene id: XLOC_009097
Gene Name: XLOC_009097
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
124-150
0.048
1
RP4-671O14.7
hsa-miR-133a-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18696-18701
0.014
1
7mer
102-120
0.012
0
7mer
760-783
0.011
1
6mer
658-679
0.003
1
6mer
4722-4737
0.002
1
6mer
12852-12876
0.002
0
6mer
6952-6977
0.002
0
6mer
5665-5689
0.001
Not Conserved
6mer
7460-7485
0.001
0
6mer
6876-6903
0.001
0
XLOC_008768
hsa-miR-133a-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018466
Biotype: transcript isomorph
Gene id: XLOC_008768
Gene Name: XLOC_008768
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
315-332
0.048
1
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