LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133a-3p


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Gene
miRNA
Score
DIANA Links
RP11-407N17.5
hsa-miR-133a-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000605298
Biotype: antisense
Gene id: ENSG00000258940
Gene Name: RP11-407N17.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
311-334
0.052
2
RP11-438D8.2
hsa-miR-133a-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000507698
Biotype: antisense
Gene id: ENSG00000249417
Gene Name: RP11-438D8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-164
0.052
0
IFNG-AS1
hsa-miR-133a-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538665
Biotype: antisense
Gene id: ENSG00000255733
Gene Name: IFNG-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
435-461
0.048
0
6mer
867-889
0.004
1
AP000302.58
hsa-miR-133a-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000450928
Biotype: antisense
Gene id: ENSG00000231355
Gene Name: AP000302.58
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-45
0.051
0
XLOC_013981
hsa-miR-133a-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028752
Biotype: transcript isomorph
Gene id: XLOC_013981
Gene Name: XLOC_013981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9432-9457
0.044
2
6mer
460-481
0.003
1
6mer
1651-1671
0.002
0
6mer
4822-4845
0.002
1
TTN-AS1
hsa-miR-133a-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588804
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
802-822
0.039
1
6mer
853-871
0.011
12
AC096559.1
hsa-miR-133a-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438292
Biotype: lincRNA
Gene id: ENSG00000224184
Gene Name: AC096559.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
379-398
0.051
2
RP11-531F16.4
hsa-miR-133a-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608000
Biotype: antisense
Gene id: ENSG00000273261
Gene Name: RP11-531F16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
26-42
0.051
1
AC015849.16
hsa-miR-133a-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000604647
Biotype: lincRNA
Gene id: ENSG00000270977
Gene Name: AC015849.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-196
0.051
0
RP11-513I15.6
hsa-miR-133a-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429998
Biotype: retained_intron
Gene id: ENSG00000225339
Gene Name: RP11-513I15.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
487-493
0.034
3
7mer
308-332
0.008
2
6mer
1911-1925
0.003
5
6mer
3338-3353
0.002
1
6mer
2585-2593
0.001
1
6mer
3139-3158
0.001
2
6mer
2401-2421
0.001
1
XLOC_004135
hsa-miR-133a-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00009152
Biotype: transcript isomorph
Gene id: XLOC_004135
Gene Name: XLOC_004135
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
165-172
0.045
1
6mer
234-251
0.006
3
RP11-171N4.2
hsa-miR-133a-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511399
Biotype: lincRNA
Gene id: ENSG00000251283
Gene Name: RP11-171N4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
126-133
0.045
1
6mer
195-212
0.006
3
RP11-1437A8.4
hsa-miR-133a-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563960
Biotype: lincRNA
Gene id: ENSG00000260827
Gene Name: RP11-1437A8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2044-2059
0.050
0
LINC00692
hsa-miR-133a-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_034055.1
Biotype: lincRNA
Gene id: NR_034055.1 (gene)
Gene Name: LINC00692
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-50
0.033
0
6mer
752-767
0.006
1
6mer
246-258
0.006
1
6mer
514-524
0.006
1
LINC00271
hsa-miR-133a-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000421378
Biotype: lincRNA
Gene id: ENSG00000231028
Gene Name: LINC00271
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
429-455
0.050
1
RP11-586K12.10
hsa-miR-133a-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570183
Biotype: lincRNA
Gene id: ENSG00000260311
Gene Name: RP11-586K12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
428-443
0.050
0
RP11-108M9.1
hsa-miR-133a-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414340
Biotype: lincRNA
Gene id: ENSG00000223643
Gene Name: RP11-108M9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
389-407
0.050
0
AC068039.4
hsa-miR-133a-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416361
Biotype: antisense
Gene id: ENSG00000228389
Gene Name: AC068039.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
340-354
0.050
0
LINC00682
hsa-miR-133a-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000499082
Biotype: lincRNA
Gene id: ENSG00000245870
Gene Name: LINC00682
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
70-91
0.033
9
6mer
53-72
0.012
10
6mer
455-475
0.005
0
SNHG14
hsa-miR-133a-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000546682
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3780-3795
0.021
0
7mer
7127-7143
0.007
1
7mer
1910-1927
0.006
2
6mer
8615-8640
0.005
1
6mer
1344-1356
0.003
2
6mer
7656-7667
0.003
1
6mer
6481-6506
0.003
2
6mer
6715-6741
0.002
1
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