LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133a-3p


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Gene
miRNA
Score
DIANA Links
RP1-56K13.3
hsa-miR-133a-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580121
Biotype: antisense
Gene id: ENSG00000265784
Gene Name: RP1-56K13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
324-345
0.037
4
7mer
314-336
0.018
3
XLOC_004362
hsa-miR-133a-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009934
Biotype: transcript isomorph
Gene id: XLOC_004362
Gene Name: XLOC_004362
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7936-7949
0.019
1
7mer
131-150
0.015
0
7mer
4800-4815
0.005
0
6mer
421-444
0.004
1
7mer
7005-7020
0.004
Not Conserved
6mer
6609-6613
0.003
0
6mer
1784-1804
0.002
1
6mer
7126-7152
0.001
0
6mer
6700-6726
0.001
Not Conserved
XLOC_004415
hsa-miR-133a-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009989
Biotype: transcript isomorph
Gene id: XLOC_004415
Gene Name: XLOC_004415
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
387-406
0.054
4
RP11-673E1.1
hsa-miR-133a-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505000
Biotype: lincRNA
Gene id: ENSG00000251600
Gene Name: RP11-673E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-119
0.054
1
XLOC_011745
hsa-miR-133a-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024428
Biotype: transcript isomorph
Gene id: XLOC_011745
Gene Name: XLOC_011745
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
438-462
0.054
1
RP5-1027O15.1
hsa-miR-133a-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528119
Biotype: lincRNA
Gene id: ENSG00000255117
Gene Name: RP5-1027O15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
498-524
0.049
1
6mer
177-199
0.005
0
RP11-248N22.1
hsa-miR-133a-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511346
Biotype: lincRNA
Gene id: ENSG00000250957
Gene Name: RP11-248N22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
682-702
0.053
4
XLOC_001430
hsa-miR-133a-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003638
Biotype: transcript isomorph
Gene id: XLOC_001430
Gene Name: XLOC_001430
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
512-531
0.053
0
CTD-2323K18.1
hsa-miR-133a-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567875
Biotype: processed_transcript
Gene id: ENSG00000260269
Gene Name: CTD-2323K18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-165
0.053
3
RP11-104N10.1
hsa-miR-133a-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565623
Biotype: antisense
Gene id: ENSG00000261118
Gene Name: RP11-104N10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
409-428
0.050
0
6mer
314-318
0.004
0
RP11-693J15.5
hsa-miR-133a-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000504409
Biotype: lincRNA
Gene id: ENSG00000205056
Gene Name: RP11-693J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
588-613
0.029
1
7mer
1060-1086
0.007
0
7mer
4773-4778
0.005
3
7mer
8499-8524
0.003
0
6mer
9774-9795
0.003
1
6mer
3844-3864
0.002
3
6mer
3368-3385
0.002
1
6mer
2974-2986
0.001
0
XLOC_004501
hsa-miR-133a-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009477
Biotype: transcript isomorph
Gene id: XLOC_004501
Gene Name: XLOC_004501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1531-1549
0.040
3
7mer
1969-1984
0.007
0
6mer
90-107
0.006
3
CTD-2309H9.3
hsa-miR-133a-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517380
Biotype: lincRNA
Gene id: ENSG00000253165
Gene Name: CTD-2309H9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
944-969
0.053
2
RP11-397A16.3
hsa-miR-133a-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585985
Biotype: lincRNA
Gene id: ENSG00000267172
Gene Name: RP11-397A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2228-2243
0.031
1
7mer
1426-1431
0.014
1
6mer
1142-1164
0.008
1
RP11-173M1.8
hsa-miR-133a-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578929
Biotype: lincRNA
Gene id: ENSG00000264469
Gene Name: RP11-173M1.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
498-513
0.028
1
7mer
842-867
0.025
4
LINC01497
hsa-miR-133a-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000420427
Biotype: lincRNA
Gene id: ENSG00000237560
Gene Name: LINC01497
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
83-109
0.053
1
XLOC_008237
hsa-miR-133a-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017372
Biotype: transcript isomorph
Gene id: XLOC_008237
Gene Name: XLOC_008237
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
197-221
0.053
1
CTD-3080P12.3
hsa-miR-133a-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514376
Biotype: antisense
Gene id: ENSG00000249201
Gene Name: CTD-3080P12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
93-114
0.029
1
8mer
901-921
0.020
1
6mer
1322-1345
0.003
0
C14orf182
hsa-miR-133a-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000533506
Biotype: lincRNA
Gene id: ENSG00000214900
Gene Name: C14orf182
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1195-1216
0.026
5
7mer
589-610
0.018
1
6mer
89-104
0.005
Not Conserved
6mer
462-483
0.004
3
XLOC_000037
hsa-miR-133a-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000830
Biotype: transcript isomorph
Gene id: XLOC_000037
Gene Name: XLOC_000037
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
362-382
0.052
2
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