LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133a-3p


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Gene
miRNA
Score
DIANA Links
AC004112.4
hsa-miR-133a-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000431064
Biotype: antisense
Gene id: ENSG00000226851
Gene Name: AC004112.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
533-556
0.052
1
6mer
134-153
0.006
1
RP11-325D8.1
hsa-miR-133a-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554205
Biotype: lincRNA
Gene id: ENSG00000259028
Gene Name: RP11-325D8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
521-527
0.057
0
LINC01279
hsa-miR-133a-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610103
Biotype: lincRNA
Gene id: ENSG00000272761
Gene Name: LINC01279
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5034-5057
0.030
1
8mer
3432-3451
0.022
1
6mer
3710-3724
0.002
1
6mer
3234-3238
0.002
0
6mer
3614-3634
0.001
3
AC006548.28
hsa-miR-133a-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11203-11221
0.009
2
7mer
44873-44897
0.006
1
7mer
4609-4631
0.005
1
7mer
51206-51229
0.004
Not Conserved
6mer
49242-49263
0.002
Not Conserved
6mer
69690-69714
0.002
Not Conserved
6mer
81572-81598
0.002
1
6mer
47601-47605
0.002
Not Conserved
6mer
70613-70617
0.002
0
6mer
51007-51022
0.002
Not Conserved
6mer
14260-14286
0.002
0
6mer
24578-24587
0.002
1
6mer
34541-34565
0.002
0
6mer
21974-21996
0.001
1
6mer
45002-45019
0.001
1
6mer
37355-37367
0.001
0
6mer
47912-47938
0.001
Not Conserved
6mer
43994-44021
0.001
0
6mer
49538-49564
0.001
Not Conserved
6mer
68448-68459
0.001
0
6mer
46828-46850
0.001
Not Conserved
6mer
44724-44737
0.001
1
6mer
10246-10271
0.001
1
6mer
33800-33814
0.001
0
6mer
12635-12655
0.001
1
6mer
49043-49068
0.001
Not Conserved
6mer
49002-49006
0.001
Not Conserved
6mer
24498-24522
0.001
2
6mer
49195-49221
0.001
Not Conserved
DPH6-AS1
hsa-miR-133a-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000501169
Biotype: lincRNA
Gene id: ENSG00000248079
Gene Name: DPH6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
605-624
0.053
6
6mer
1145-1155
0.004
2
RP4-541C22.5
hsa-miR-133a-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534431
Biotype: antisense
Gene id: ENSG00000255202
Gene Name: RP4-541C22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
458-484
0.057
11
LL22NC03-86G7.1
hsa-miR-133a-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32363-32381
0.016
1
8mer
3353-3379
0.007
1
7mer
35833-35838
0.003
2
7mer
9975-9999
0.003
0
8mer
9473-9494
0.003
1
7mer
32567-32589
0.002
0
6mer
26110-26114
0.002
0
6mer
8545-8549
0.002
1
6mer
30921-30939
0.002
2
6mer
3775-3799
0.002
2
7mer
35232-35246
0.002
0
6mer
36118-36122
0.002
1
6mer
26268-26277
0.002
1
6mer
34214-34223
0.002
2
6mer
25890-25901
0.002
0
6mer
11136-11160
0.001
1
6mer
25319-25344
0.001
1
6mer
16847-16869
0.001
1
6mer
10023-10049
0.001
1
XLOC_005111
hsa-miR-133a-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00011109
Biotype: transcript isomorph
Gene id: XLOC_005111
Gene Name: XLOC_005111
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
757-783
0.051
2
6mer
329-350
0.005
0
RP11-203B9.4
hsa-miR-133a-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000586466
Biotype: antisense
Gene id: ENSG00000226803
Gene Name: RP11-203B9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-19
0.052
8
6mer
434-456
0.004
2
TTN-AS1
hsa-miR-133a-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450692
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
684-704
0.049
1
6mer
337-355
0.007
8
AC000068.5
hsa-miR-133a-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000431090
Biotype: antisense
Gene id: ENSG00000185065
Gene Name: AC000068.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1849-1872
0.035
4
9mer
516-528
0.017
0
7mer
935-953
0.005
1
HAGLR
hsa-miR-133a-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413969
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
219-239
0.056
6
XLOC_007773
hsa-miR-133a-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016402
Biotype: transcript isomorph
Gene id: XLOC_007773
Gene Name: XLOC_007773
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1654-1673
0.055
2
RP11-385J1.2
hsa-miR-133a-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432385
Biotype: antisense
Gene id: ENSG00000237978
Gene Name: RP11-385J1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
38-54
0.055
3
RP5-1027O15.1
hsa-miR-133a-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527492
Biotype: lincRNA
Gene id: ENSG00000255117
Gene Name: RP5-1027O15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
93-119
0.055
1
CTD-2207A17.1
hsa-miR-133a-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508853
Biotype: lincRNA
Gene id: ENSG00000248461
Gene Name: CTD-2207A17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1269-1286
0.034
4
7mer
727-753
0.011
6
6mer
1912-1928
0.004
1
6mer
975-999
0.003
4
6mer
723-745
0.003
1
LINC01497
hsa-miR-133a-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000455460
Biotype: lincRNA
Gene id: ENSG00000237560
Gene Name: LINC01497
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-164
0.055
1
AC074391.1
hsa-miR-133a-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606978
Biotype: lincRNA
Gene id: ENSG00000204929
Gene Name: AC074391.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1077-1100
0.040
0
8mer
812-831
0.015
1
AC092159.2
hsa-miR-133a-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435573
Biotype: antisense
Gene id: ENSG00000233296
Gene Name: AC092159.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-76
0.055
1
LINC01128
hsa-miR-133a-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445118
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
527-548
0.050
2
6mer
1251-1255
0.003
1
6mer
4213-4233
0.001
Not Conserved
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