LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133a-3p


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Gene
miRNA
Score
DIANA Links
HAGLR
hsa-miR-133a-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417086
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
681-701
0.062
6
RBFADN
hsa-miR-133a-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000568911
Biotype: lincRNA
Gene id: ENSG00000261126
Gene Name: RBFADN
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-100
0.036
0
7mer
1425-1442
0.008
0
6mer
351-370
0.006
0
6mer
4735-4759
0.006
1
6mer
4994-5017
0.004
0
6mer
1086-1090
0.003
1
XLOC_011329
hsa-miR-133a-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023483
Biotype: transcript isomorph
Gene id: XLOC_011329
Gene Name: XLOC_011329
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
512-527
0.028
0
7mer
435-456
0.015
1
7mer
459-480
0.010
0
7mer
483-504
0.009
0
HAGLR
hsa-miR-133a-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000436126
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
489-509
0.062
6
CTD-2534J5.1
hsa-miR-133a-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517640
Biotype: lincRNA
Gene id: ENSG00000253783
Gene Name: CTD-2534J5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
347-365
0.040
1
6mer
211-236
0.013
1
6mer
49-53
0.008
0
MIR6818
hsa-miR-133a-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35150-35174
0.006
1
7mer
33729-33751
0.006
Not Conserved
7mer
38813-38834
0.005
1
6mer
48590-48594
0.005
2
9mer
14828-14854
0.004
1
7mer
42803-42826
0.004
0
6mer
5636-5640
0.003
5
6mer
1275-1279
0.003
1
6mer
4691-4695
0.002
1
6mer
9683-9703
0.002
2
6mer
21155-21173
0.002
3
6mer
37964-37977
0.002
3
6mer
6780-6800
0.002
2
6mer
45720-45739
0.002
4
6mer
2222-2247
0.002
3
6mer
28828-28844
0.002
1
6mer
18829-18854
0.002
1
6mer
44466-44488
0.002
2
6mer
10485-10508
0.001
0
6mer
2344-2358
0.001
Not Conserved
6mer
13335-13355
0.001
0
6mer
7996-8020
0.001
0
6mer
16394-16414
0.001
0
6mer
4900-4912
0.001
0
LINC01128
hsa-miR-133a-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416570
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
589-610
0.061
2
ZNF337-AS1
hsa-miR-133a-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000439498
Biotype: antisense
Gene id: ENSG00000213742
Gene Name: ZNF337-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
870-885
0.051
1
6mer
454-468
0.005
1
6mer
647-666
0.004
1
AP000946.2
hsa-miR-133a-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000443479
Biotype: lincRNA
Gene id: ENSG00000233480
Gene Name: AP000946.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-173
0.060
1
LINC00487
hsa-miR-133a-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412528
Biotype: lincRNA
Gene id: ENSG00000205837
Gene Name: LINC00487
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9-22
0.060
3
RP11-875O11.2
hsa-miR-133a-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000501897
Biotype: antisense
Gene id: ENSG00000246130
Gene Name: RP11-875O11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2591-2614
0.044
5
7mer
310-329
0.013
1
6mer
513-531
0.003
1
TTN-AS1
hsa-miR-133a-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588716
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
580-600
0.060
1
RP11-145O15.3
hsa-miR-133a-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000529018
Biotype: antisense
Gene id: ENSG00000255069
Gene Name: RP11-145O15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1088-1105
0.049
5
6mer
1378-1398
0.008
6
6mer
863-878
0.002
Not Conserved
XLOC_008555
hsa-miR-133a-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018281
Biotype: transcript isomorph
Gene id: XLOC_008555
Gene Name: XLOC_008555
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-135
0.059
2
TTN-AS1
hsa-miR-133a-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415561
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
414-434
0.059
1
XLOC_012427
hsa-miR-133a-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025599
Biotype: transcript isomorph
Gene id: XLOC_012427
Gene Name: XLOC_012427
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-245
0.057
0
6mer
2595-2621
0.002
Not Conserved
OSBPL10-AS1
hsa-miR-133a-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000447181
Biotype: antisense
Gene id: ENSG00000232490
Gene Name: OSBPL10-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-104
0.058
1
XLOC_011287
hsa-miR-133a-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023442
Biotype: transcript isomorph
Gene id: XLOC_011287
Gene Name: XLOC_011287
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
211-229
0.008
0
6mer
47-66
0.007
0
6mer
188-206
0.007
0
6mer
23-42
0.007
0
6mer
71-90
0.007
0
6mer
165-183
0.007
0
6mer
142-160
0.007
0
6mer
95-113
0.007
0
LINC00680
hsa-miR-133a-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422882
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2570-2575
0.047
0
6mer
283-297
0.011
0
RP11-1028N23.3
hsa-miR-133a-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550378
Biotype: lincRNA
Gene id: ENSG00000258108
Gene Name: RP11-1028N23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
611-627
0.058
1
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