LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133a-3p


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Gene
miRNA
Score
DIANA Links
LINC01128
hsa-miR-133a-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449005
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
615-636
0.068
2
AC009501.4
hsa-miR-133a-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000429952
Biotype: antisense
Gene id: ENSG00000231609
Gene Name: AC009501.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
244-271
0.062
6
6mer
214-228
0.006
7
RP11-166A12.1
hsa-miR-133a-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514657
Biotype: lincRNA
Gene id: ENSG00000251538
Gene Name: RP11-166A12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
398-416
0.067
3
RP11-317G6.1
hsa-miR-133a-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559303
Biotype: antisense
Gene id: ENSG00000259589
Gene Name: RP11-317G6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
559-579
0.067
3
TTN-AS1
hsa-miR-133a-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000592836
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
571-591
0.067
1
RP11-269F21.3
hsa-miR-133a-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511219
Biotype: lincRNA
Gene id: ENSG00000249815
Gene Name: RP11-269F21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
101-120
0.066
1
KCNIP4-IT1
hsa-miR-133a-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_002813.1
Biotype: sense
Gene id: NR_002813.1 (gene)
Gene Name: KCNIP4-IT1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-148
0.058
1
6mer
4548-4572
0.003
5
6mer
6824-6832
0.002
2
6mer
1667-1671
0.001
0
6mer
8327-8339
0.001
1
XLOC_003038
hsa-miR-133a-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006435
Biotype: transcript isomorph
Gene id: XLOC_003038
Gene Name: XLOC_003038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
125-143
0.050
0
6mer
638-642
0.016
0
RP11-104N10.1
hsa-miR-133a-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565310
Biotype: antisense
Gene id: ENSG00000261118
Gene Name: RP11-104N10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
23-42
0.066
0
HAGLR
hsa-miR-133a-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000546798
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-309
0.066
6
LINC00271
hsa-miR-133a-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000579944
Biotype: lincRNA
Gene id: ENSG00000231028
Gene Name: LINC00271
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-204
0.066
1
RP11-293A10.3
hsa-miR-133a-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437400
Biotype: antisense
Gene id: ENSG00000232971
Gene Name: RP11-293A10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
353-372
0.066
1
RP11-930O11.3
hsa-miR-133a-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000612106
Biotype: antisense
Gene id: ENSG00000275569
Gene Name: RP11-930O11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
527-551
0.066
1
CTD-2626G11.2
hsa-miR-133a-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593903
Biotype: lincRNA
Gene id: ENSG00000268416
Gene Name: CTD-2626G11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
194-199
0.054
0
7mer
7279-7304
0.006
Not Conserved
8mer
5379-5400
0.002
Not Conserved
6mer
4309-4327
0.002
Not Conserved
6mer
6760-6776
0.001
Not Conserved
6mer
2566-2582
0.001
Not Conserved
RP11-1007G5.2
hsa-miR-133a-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525706
Biotype: antisense
Gene id: ENSG00000254588
Gene Name: RP11-1007G5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1159-1175
0.058
1
6mer
958-985
0.007
6
XLOC_010279
hsa-miR-133a-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020261
Biotype: transcript isomorph
Gene id: XLOC_010279
Gene Name: XLOC_010279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
624-629
0.036
0
6mer
2553-2564
0.013
0
6mer
1465-1475
0.009
0
6mer
1159-1183
0.007
0
PTCHD1-AS
hsa-miR-133a-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000455399
Biotype: lincRNA
Gene id: ENSG00000233067
Gene Name: PTCHD1-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-189
0.061
3
6mer
465-490
0.003
0
LINC01128
hsa-miR-133a-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_047525.1
Biotype: lincRNA
Gene id: NR_047525.1 (gene)
Gene Name: LINC01128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
411-432
0.060
2
6mer
1135-1139
0.003
1
6mer
4097-4117
0.001
Not Conserved
ERVH48-1
hsa-miR-133a-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000447535
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
323-327
0.012
0
6mer
2238-2242
0.012
0
6mer
2158-2162
0.009
0
6mer
1864-1883
0.009
0
6mer
1420-1440
0.007
0
6mer
870-897
0.007
0
6mer
828-832
0.007
0
RP11-49I11.4
hsa-miR-133a-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000612081
Biotype: sense_intronic
Gene id: ENSG00000274849
Gene Name: RP11-49I11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
253-259
0.064
3
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