LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133a-3p


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Gene
miRNA
Score
DIANA Links
TTN-AS1
hsa-miR-133a-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585358
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
736-756
0.068
1
6mer
389-407
0.007
8
HAGLR
hsa-miR-133a-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425005
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
195-215
0.075
6
RP11-290O12.2
hsa-miR-133a-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000623269
Biotype: antisense
Gene id: ENSG00000280241
Gene Name: RP11-290O12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
74-98
0.067
3
7mer
64-82
0.007
3
HAGLR
hsa-miR-133a-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452365
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-171
0.073
6
XLOC_011202
hsa-miR-133a-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023259
Biotype: transcript isomorph
Gene id: XLOC_011202
Gene Name: XLOC_011202
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1613-1634
0.014
1
7mer
1561-1586
0.014
1
7mer
1644-1658
0.011
0
7mer
1589-1610
0.010
1
7mer
532-553
0.009
1
7mer
1670-1691
0.008
0
6mer
1300-1316
0.003
1
6mer
1652-1667
0.003
0
XLOC_008759
hsa-miR-133a-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018460
Biotype: transcript isomorph
Gene id: XLOC_008759
Gene Name: XLOC_008759
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-167
0.057
2
6mer
54-58
0.010
3
6mer
652-670
0.005
0
PRG1
hsa-miR-133a-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_026881.1
Biotype: lincRNA
Gene id: NR_026881.1 (gene)
Gene Name: PRG1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
272-291
0.072
1
HAGLR
hsa-miR-133a-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000547207
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
516-536
0.072
6
LL22NC03-22D1.1
hsa-miR-133a-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1736-1763
0.029
5
7mer
9708-9724
0.008
2
7mer
1980-2000
0.006
2
6mer
28583-28601
0.004
1
7mer
8031-8037
0.004
2
6mer
28236-28240
0.004
1
7mer
11066-11092
0.003
0
6mer
1416-1441
0.002
1
6mer
4731-4758
0.002
1
6mer
12895-12916
0.002
1
6mer
16079-16083
0.002
0
6mer
25796-25800
0.002
1
6mer
19028-19052
0.002
0
6mer
15485-15506
0.001
1
6mer
27045-27061
0.001
Not Conserved
6mer
11613-11633
0.001
Not Conserved
HAGLR
hsa-miR-133a-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000552156
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
203-223
0.071
6
RP11-156E6.1
hsa-miR-133a-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000560400
Biotype: sense_overlapping
Gene id: ENSG00000259623
Gene Name: RP11-156E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1077-1094
0.062
6
6mer
2476-2500
0.004
1
6mer
1384-1407
0.003
4
HAGLR
hsa-miR-133a-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000549329
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-309
0.070
6
XLOC_008417
hsa-miR-133a-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018141
Biotype: transcript isomorph
Gene id: XLOC_008417
Gene Name: XLOC_008417
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-178
0.069
1
LOC100506990
hsa-miR-133a-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_040091.1
Biotype: lincRNA
Gene id: NR_040091.1 (gene)
Gene Name: LOC100506990
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2976-3000
0.038
3
9mer
2019-2046
0.017
0
6mer
3123-3144
0.005
0
6mer
2204-2220
0.003
2
6mer
2645-2663
0.003
0
6mer
490-510
0.003
0
THAP9-AS1
hsa-miR-133a-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504792
Biotype: antisense
Gene id: ENSG00000251022
Gene Name: THAP9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2480-2496
0.040
1
8mer
1343-1369
0.029
1
RP11-81H3.2
hsa-miR-133a-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_038300.1
Biotype: lincRNA
Gene id: NR_038300.1 (gene)
Gene Name: RP11-81H3.2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
39-58
0.049
0
7mer
97-119
0.020
0
RP11-81H3.2
hsa-miR-133a-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549905
Biotype: lincRNA
Gene id: ENSG00000251138
Gene Name: RP11-81H3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46-65
0.049
0
7mer
104-126
0.020
0
HAGLR
hsa-miR-133a-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447538
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-315
0.068
6
ERVH48-1
hsa-miR-133a-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000617971
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1791-1795
0.014
0
6mer
381-385
0.012
0
6mer
1417-1436
0.011
0
6mer
1711-1715
0.010
0
6mer
423-450
0.010
0
6mer
973-993
0.010
0
XLOC_001212
hsa-miR-133a-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001829
Biotype: transcript isomorph
Gene id: XLOC_001212
Gene Name: XLOC_001212
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1143-1165
0.068
4
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