LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133a-3p


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Gene
miRNA
Score
DIANA Links
XLOC_000651
hsa-miR-133a-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001364
Biotype: transcript isomorph
Gene id: XLOC_000651
Gene Name: XLOC_000651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
199-223
0.049
0
7mer
257-280
0.042
0
XLOC_009403
hsa-miR-133a-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019600
Biotype: transcript isomorph
Gene id: XLOC_009403
Gene Name: XLOC_009403
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-109
0.090
5
RP11-363J20.1
hsa-miR-133a-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554898
Biotype: lincRNA
Gene id: ENSG00000258957
Gene Name: RP11-363J20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-209
0.083
2
6mer
625-649
0.004
1
6mer
859-876
0.003
2
XLOC_001956
hsa-miR-133a-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005063
Biotype: transcript isomorph
Gene id: XLOC_001956
Gene Name: XLOC_001956
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
960-983
0.078
9
6mer
2893-2917
0.005
3
6mer
2920-2933
0.004
0
6mer
2143-2164
0.002
1
SNORA67
hsa-miR-133a-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581621
Biotype: processed_transcript
Gene id: ENSG00000264772
Gene Name: SNORA67
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1040-1060
0.060
8
8mer
2031-2051
0.019
6
6mer
666-690
0.006
10
7mer
3446-3466
0.004
1
HAGLR
hsa-miR-133a-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456876
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
203-224
0.089
6
AP000146.2
hsa-miR-133a-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000454182
Biotype: lincRNA
Gene id: ENSG00000230379
Gene Name: AP000146.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-188
0.067
1
7mer
152-166
0.015
1
6mer
63-88
0.007
1
AP000146.2
hsa-miR-133a-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000444178
Biotype: lincRNA
Gene id: ENSG00000230379
Gene Name: AP000146.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-188
0.064
1
7mer
152-166
0.016
1
6mer
63-88
0.007
1
RP3-323A16.1
hsa-miR-133a-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37090-37115
0.016
7
8mer
29343-29359
0.010
1
7mer
1676-1700
0.006
2
8mer
40993-41018
0.005
0
8mer
32061-32081
0.004
0
7mer
22535-22560
0.004
Not Conserved
8mer
47423-47445
0.003
0
6mer
47867-47871
0.002
1
6mer
26322-26326
0.002
1
6mer
19237-19254
0.002
1
6mer
8164-8185
0.002
0
6mer
24458-24483
0.002
1
6mer
25935-25955
0.002
1
6mer
33971-33987
0.002
0
6mer
21120-21141
0.002
1
6mer
31668-31690
0.002
1
6mer
41850-41871
0.002
2
6mer
26809-26835
0.002
Not Conserved
7mer
5725-5730
0.002
0
6mer
6403-6418
0.002
0
6mer
50577-50597
0.001
0
6mer
5675-5695
0.001
0
6mer
51862-51885
0.001
1
6mer
16013-16039
0.001
1
6mer
9769-9794
0.001
1
6mer
38687-38713
0.001
1
6mer
26035-26040
0.001
1
6mer
8364-8383
0.001
0
6mer
26377-26381
0.001
1
6mer
8420-8424
0.001
0
6mer
8218-8232
0.001
0
6mer
24520-24533
0.001
0
6mer
32121-32125
0.001
0
XLOC_003260
hsa-miR-133a-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005831
Biotype: transcript isomorph
Gene id: XLOC_003260
Gene Name: XLOC_003260
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
669-689
0.083
1
AP000146.2
hsa-miR-133a-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441666
Biotype: lincRNA
Gene id: ENSG00000230379
Gene Name: AP000146.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-188
0.061
1
7mer
152-166
0.015
1
6mer
63-88
0.006
1
CH507-396I9.3
hsa-miR-133a-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000624951
Biotype: lincRNA
Gene id: ENSG00000278961
Gene Name: CH507-396I9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-34
0.078
3
XLOC_007734
hsa-miR-133a-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016354
Biotype: transcript isomorph
Gene id: XLOC_007734
Gene Name: XLOC_007734
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-382
0.056
1
7mer
197-217
0.021
3
RP11-575H3.1
hsa-miR-133a-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000567067
Biotype: lincRNA
Gene id: ENSG00000261600
Gene Name: RP11-575H3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-378
0.076
3
RP11-48F14.1
hsa-miR-133a-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000427914
Biotype: lincRNA
Gene id: ENSG00000224406
Gene Name: RP11-48F14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2218-2241
0.076
4
XLOC_009222
hsa-miR-133a-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2870-2893
0.068
0
6mer
3823-3848
0.004
0
9mer
722-745
0.003
Not Conserved
6mer
3688-3708
0.001
Not Conserved
AC010091.1
hsa-miR-133a-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000413944
Biotype: lincRNA
Gene id: ENSG00000233491
Gene Name: AC010091.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3920-3935
0.053
6
6mer
307-324
0.009
6
6mer
4233-4254
0.007
4
6mer
932-953
0.004
1
6mer
3113-3132
0.001
0
6mer
2927-2947
0.001
0
6mer
3103-3129
0.001
1
RP11-290O12.2
hsa-miR-133a-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000623325
Biotype: antisense
Gene id: ENSG00000280241
Gene Name: RP11-290O12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-198
0.066
3
7mer
164-182
0.009
3
CTD-2176I21.2
hsa-miR-133a-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510198
Biotype: antisense
Gene id: ENSG00000248733
Gene Name: CTD-2176I21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
19-38
0.075
2
RP11-139K4.2
hsa-miR-133a-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000489016
Biotype: lincRNA
Gene id: ENSG00000244247
Gene Name: RP11-139K4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
522-534
0.047
4
8mer
66-83
0.028
0
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