LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133a-3p


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Gene
miRNA
Score
DIANA Links
CTA-796E4.5
hsa-miR-133a-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15997-16008
0.013
1
7mer
25455-25467
0.007
1
7mer
4125-4143
0.004
1
7mer
10347-10361
0.004
1
6mer
6951-6976
0.003
5
6mer
30568-30583
0.002
1
6mer
2047-2062
0.002
3
6mer
22157-22161
0.002
2
6mer
1775-1799
0.002
0
6mer
9675-9701
0.002
1
6mer
1327-1350
0.002
0
6mer
9200-9214
0.002
1
6mer
16566-16586
0.002
0
6mer
5217-5232
0.001
1
RP11-780O17.1
hsa-miR-133a-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511234
Biotype: lincRNA
Gene id: ENSG00000250865
Gene Name: RP11-780O17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
490-509
0.048
1
CTD-2132N18.4
hsa-miR-133a-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000602842
Biotype: sense_intronic
Gene id: ENSG00000270010
Gene Name: CTD-2132N18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
299-315
0.048
7
RP11-562F9.2
hsa-miR-133a-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502518
Biotype: lincRNA
Gene id: ENSG00000249152
Gene Name: RP11-562F9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-97
0.048
1
AC004951.6
hsa-miR-133a-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447643
Biotype: lincRNA
Gene id: ENSG00000228434
Gene Name: AC004951.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
203-218
0.029
0
6mer
622-645
0.015
0
7mer
1434-1457
0.003
Not Conserved
XLOC_001751
hsa-miR-133a-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003048
Biotype: transcript isomorph
Gene id: XLOC_001751
Gene Name: XLOC_001751
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
657-678
0.047
1
IFNG-AS1
hsa-miR-133a-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541715
Biotype: antisense
Gene id: ENSG00000255733
Gene Name: IFNG-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
542-568
0.047
0
RP3-406A7.7
hsa-miR-133a-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000564248
Biotype: lincRNA
Gene id: ENSG00000260418
Gene Name: RP3-406A7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
262-285
0.047
1
XLOC_001401
hsa-miR-133a-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003609
Biotype: transcript isomorph
Gene id: XLOC_001401
Gene Name: XLOC_001401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1974-1993
0.012
0
6mer
2069-2090
0.011
0
6mer
783-805
0.009
0
6mer
1027-1053
0.008
0
6mer
791-810
0.006
0
RP11-631N16.2
hsa-miR-133a-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550290
Biotype: lincRNA
Gene id: ENSG00000257354
Gene Name: RP11-631N16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8547-8567
0.023
2
8mer
2804-2825
0.015
1
6mer
8291-8303
0.005
0
6mer
8570-8592
0.004
1
RP5-991C6.4
hsa-miR-133a-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000457116
Biotype: sense_intronic
Gene id: ENSG00000232031
Gene Name: RP5-991C6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-41
0.040
2
6mer
162-181
0.006
2
XLOC_003973
hsa-miR-133a-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008501
Biotype: transcript isomorph
Gene id: XLOC_003973
Gene Name: XLOC_003973
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
40-49
0.021
0
6mer
360-374
0.014
0
6mer
258-272
0.012
0
XLOC_007506
hsa-miR-133a-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016118
Biotype: transcript isomorph
Gene id: XLOC_007506
Gene Name: XLOC_007506
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
202-225
0.031
2
7mer
977-983
0.012
2
6mer
809-832
0.003
Not Conserved
RP11-3P17.4
hsa-miR-133a-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473595
Biotype: lincRNA
Gene id: ENSG00000240567
Gene Name: RP11-3P17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2729-2750
0.025
0
7mer
2364-2384
0.013
0
6mer
2493-2516
0.005
Not Conserved
6mer
352-368
0.004
0
WT1-AS
hsa-miR-133a-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525436
Biotype: antisense
Gene id: ENSG00000183242
Gene Name: WT1-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1088-1111
0.047
2
DAB1-AS1
hsa-miR-133a-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000591882
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
725-745
0.016
0
7mer
354-367
0.014
3
7mer
695-716
0.011
2
6mer
640-666
0.005
2
RP11-354I13.1
hsa-miR-133a-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567862
Biotype: lincRNA
Gene id: ENSG00000261310
Gene Name: RP11-354I13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-165
0.046
0
CTC-459F4.3
hsa-miR-133a-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586220
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
370-375
0.046
0
XLOC_004539
hsa-miR-133a-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010082
Biotype: transcript isomorph
Gene id: XLOC_004539
Gene Name: XLOC_004539
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-85
0.041
1
6mer
1896-1919
0.005
Not Conserved
RP11-108M9.1
hsa-miR-133a-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422345
Biotype: lincRNA
Gene id: ENSG00000223643
Gene Name: RP11-108M9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
475-493
0.046
0
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