LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
RP11-398E10.1
hsa-miR-1294
0.933
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556405
Biotype: lincRNA
Gene id: ENSG00000258998
Gene Name: RP11-398E10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
565-584
0.049
1
6mer
827-836
0.003
1
6mer
1245-1259
0.002
1
STARD13-AS
hsa-miR-1294
0.933
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609061
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
184-203
0.046
1
7mer
739-763
0.008
1
XLOC_009936
hsa-miR-1294
0.933
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020626
Biotype: transcript isomorph
Gene id: XLOC_009936
Gene Name: XLOC_009936
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
205-226
0.054
0
RP11-425D17.1
hsa-miR-1294
0.933
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619739
Biotype: antisense
Gene id: ENSG00000278733
Gene Name: RP11-425D17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
327-351
0.054
2
HOXA-AS2
hsa-miR-1294
0.932
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000517635
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2182-2200
0.054
5
LINC00330
hsa-miR-1294
0.931
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_038433.2
Biotype: lincRNA
Gene id: NR_038433.2 (gene)
Gene Name: LINC00330
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1953-1979
0.053
1
MEG3
hsa-miR-1294
0.931
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000412736
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1543-1566
0.043
5
7mer
153-178
0.006
0
6mer
43-66
0.004
1
MIR6818
hsa-miR-1294
0.930
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6147-6169
0.010
1
7mer
31844-31870
0.009
2
7mer
29085-29109
0.005
5
7mer
14941-14961
0.004
0
6mer
48289-48308
0.003
2
7mer
18068-18088
0.002
0
6mer
46451-46474
0.002
3
6mer
18963-18989
0.002
2
6mer
1687-1708
0.002
2
7mer
37418-37445
0.002
1
6mer
28109-28127
0.001
5
8mer+wobble
46250-46266
0.001
1
6mer
42571-42593
0.001
3
6mer
30743-30764
0.001
3
6mer
24319-24341
0.001
0
6mer
5150-5170
0.001
0
6mer
32326-32338
0.001
1
6mer
4968-4983
0.001
1
6mer
22546-22573
0.001
0
6mer
2423-2440
0.001
0
6mer
37028-37048
0.001
2
6mer
37307-37333
0.001
0
LINC01001
hsa-miR-1294
0.930
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526704
Biotype: lincRNA
Gene id: ENSG00000230724
Gene Name: LINC01001
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2058-2079
0.012
0
7mer
1321-1340
0.005
Not Conserved
6mer
2122-2141
0.005
0
7mer
1953-1972
0.005
0
7mer
1835-1856
0.004
Not Conserved
7mer
1606-1629
0.004
Not Conserved
6mer
43-62
0.004
Not Conserved
7mer
659-678
0.003
Not Conserved
7mer
176-195
0.003
Not Conserved
7mer
903-930
0.002
Not Conserved
7mer
1057-1076
0.002
Not Conserved
7mer
1804-1817
0.002
Not Conserved
6mer
141-158
0.002
Not Conserved
6mer
1574-1593
0.001
Not Conserved
LINC00330
hsa-miR-1294
0.930
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000414562
Biotype: lincRNA
Gene id: ENSG00000235097
Gene Name: LINC00330
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1954-1980
0.053
1
SPACA6P-AS
hsa-miR-1294
0.929
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000602324
Biotype: lincRNA
Gene id: ENSG00000269959
Gene Name: SPACA6P-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3817-3841
0.032
6
7mer
3794-3811
0.016
6
6mer
3129-3151
0.002
3
6mer
1165-1186
0.002
1
RP11-80F22.15
hsa-miR-1294
0.928
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562591
Biotype: lincRNA
Gene id: ENSG00000260857
Gene Name: RP11-80F22.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-106
0.053
0
RP11-80F22.15
hsa-miR-1294
0.928
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_034018.1
Biotype: lincRNA
Gene id: NR_034018.1 (gene)
Gene Name: RP11-80F22.15
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
93-112
0.053
0
RP11-863K10.7
hsa-miR-1294
0.927
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000330539
Biotype: antisense
Gene id: ENSG00000183154
Gene Name: RP11-863K10.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-21
0.036
1
7mer
1107-1126
0.012
1
7mer
1389-1413
0.002
0
6mer
709-733
0.002
0
LINC01002
hsa-miR-1294
0.926
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000618269
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
513-532
0.052
1
LINC00621
hsa-miR-1294
0.926
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000577004
Biotype: lincRNA
Gene id: ENSG00000262619
Gene Name: LINC00621
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
41-61
0.048
0
6mer
1057-1081
0.004
0
RP3-323A16.1
hsa-miR-1294
0.926
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24527-24543
0.006
1
8mer
5464-5482
0.005
0
7mer
40232-40253
0.004
1
6mer
133-157
0.004
0
6mer
45592-45613
0.003
3
6mer
14001-14026
0.003
4
6mer
1281-1306
0.002
2
7mer
2345-2372
0.002
0
7mer
12520-12540
0.002
0
6mer
26151-26178
0.002
1
6mer
52895-52914
0.002
1
6mer
48435-48456
0.002
1
6mer
45095-45106
0.001
0
6mer
41096-41110
0.001
0
6mer
10809-10835
0.001
1
7mer
4903-4921
0.001
0
6mer
44101-44127
0.001
0
6mer
48294-48320
0.001
Not Conserved
6mer
15449-15474
0.001
0
6mer
28224-28239
0.001
1
6mer
20596-20608
0.001
1
6mer
45395-45412
0.001
1
6mer
11367-11391
0.001
1
6mer
47243-47269
0.001
1
6mer
11256-11273
0.001
0
6mer
5816-5832
0.001
0
6mer
37734-37754
0.001
0
6mer
14092-14111
0.001
1
6mer
45181-45194
0.001
1
AC016629.3
hsa-miR-1294
0.925
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596029
Biotype: antisense
Gene id: ENSG00000269600
Gene Name: AC016629.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
55-79
0.049
0
6mer
248-272
0.002
Not Conserved
MEG3
hsa-miR-1294
0.925
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000429159
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1490-1513
0.042
5
7mer
193-218
0.006
0
6mer
83-106
0.004
1
MEG3
hsa-miR-1294
0.924
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046464.1
Biotype: lincRNA
Gene id: NR_046464.1 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1538-1561
0.042
5
7mer
193-218
0.006
0
6mer
83-106
0.004
1
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