LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
RP11-503E24.2
hsa-miR-1294
0.944
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522190
Biotype: antisense
Gene id: ENSG00000254165
Gene Name: RP11-503E24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
504-517
0.057
1
RP11-301G19.1
hsa-miR-1294
0.943
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000412872
Biotype: lincRNA
Gene id: ENSG00000227706
Gene Name: RP11-301G19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
485-494
0.045
0
6mer
1374-1400
0.012
0
LINC01002
hsa-miR-1294
0.943
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000614996
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
376-397
0.018
1
7mer
153-174
0.011
0
7mer
271-290
0.010
1
6mer
1119-1135
0.006
1
6mer
440-459
0.006
1
7mer
122-135
0.004
Not Conserved
BRWD1-IT2
hsa-miR-1294
0.942
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_033800.1
Biotype: sense
Gene id: NR_033800.1 (gene)
Gene Name: BRWD1-IT2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
607-633
0.026
0
7mer
990-1016
0.026
0
6mer
233-254
0.004
1
LINC01002
hsa-miR-1294
0.942
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000617805
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
208-227
0.056
1
STARD13-AS
hsa-miR-1294
0.941
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609108
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
290-309
0.049
1
7mer
659-683
0.007
1
GPR1-AS
hsa-miR-1294
0.940
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000624973
Biotype: retained_intron
Gene id: ENSG00000279220
Gene Name: GPR1-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
422-445
0.056
1
RP11-279F6.2
hsa-miR-1294
0.940
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558010
Biotype: lincRNA
Gene id: ENSG00000259457
Gene Name: RP11-279F6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
162-179
0.056
1
RP11-168O16.1
hsa-miR-1294
0.939
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000458003
Biotype: antisense
Gene id: ENSG00000229191
Gene Name: RP11-168O16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3161-3185
0.018
0
7mer
121-145
0.014
1
7mer
3426-3443
0.007
0
8mer
3111-3129
0.006
Not Conserved
6mer
427-452
0.005
4
6mer
2870-2892
0.003
Not Conserved
6mer
948-965
0.002
1
6mer
948-974
0.001
1
LINC00312
hsa-miR-1294
0.938
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000442796
Biotype: lincRNA
Gene id: ENSG00000237697
Gene Name: LINC00312
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1561-1583
0.055
1
LINC00174
hsa-miR-1294
0.938
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000416572
Biotype: lincRNA
Gene id: ENSG00000179406
Gene Name: LINC00174
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-188
0.055
0
CH17-264L24.1
hsa-miR-1294
0.937
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624350
Biotype: lincRNA
Gene id: ENSG00000279278
Gene Name: CH17-264L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3019-3040
0.026
0
7mer
8210-8227
0.023
0
6mer
6988-6999
0.002
0
7mer
3579-3604
0.002
0
7mer
3633-3655
0.001
0
6mer
5036-5061
0.001
0
6mer
4116-4129
0.001
0
XLOC_011313
hsa-miR-1294
0.937
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023466
Biotype: transcript isomorph
Gene id: XLOC_011313
Gene Name: XLOC_011313
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2111-2133
0.029
1
8mer
1533-1552
0.019
2
6mer
2111-2127
0.005
1
6mer
190-205
0.002
0
CTA-796E4.5
hsa-miR-1294
0.937
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18125-18146
0.008
0
6mer
285-307
0.005
3
7mer
10030-10050
0.005
1
8mer+mismatch
23249-23269
0.003
2
6mer
6521-6537
0.003
4
7mer
14694-14712
0.003
1
8mer
5638-5658
0.003
1
6mer
477-485
0.002
1
6mer
21570-21588
0.002
2
6mer
3556-3583
0.002
2
6mer
20254-20268
0.002
Not Conserved
6mer
2108-2127
0.002
2
6mer
8636-8645
0.002
1
6mer
2639-2662
0.002
1
6mer
17751-17770
0.002
0
6mer
11771-11795
0.002
1
6mer
26058-26078
0.001
1
6mer
26352-26369
0.001
1
6mer
20587-20613
0.001
1
6mer
4137-4161
0.001
1
6mer
10233-10243
0.001
1
6mer
5415-5433
0.001
1
6mer
9282-9301
0.001
0
6mer
5581-5605
0.001
0
RP11-617F23.1
hsa-miR-1294
0.937
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558334
Biotype: antisense
Gene id: ENSG00000259291
Gene Name: RP11-617F23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
826-849
0.028
2
8mer+wobble
74-95
0.017
2
7mer
279-285
0.009
3
AC024560.2
hsa-miR-1294
0.936
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424493
Biotype: lincRNA
Gene id: ENSG00000236833
Gene Name: AC024560.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
516-540
0.034
0
6mer
34-56
0.015
0
6mer
842-864
0.006
0
RP11-15A1.7
hsa-miR-1294
0.936
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589021
Biotype: antisense
Gene id: ENSG00000266921
Gene Name: RP11-15A1.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
500-521
0.022
5
7mer
248-274
0.019
4
7mer
416-440
0.010
1
6mer
1213-1235
0.003
1
6mer
1019-1040
0.002
0
AF186192.6
hsa-miR-1294
0.936
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000583427
Biotype: lincRNA
Gene id: ENSG00000263612
Gene Name: AF186192.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
844-867
0.055
1
RP11-284F21.9
hsa-miR-1294
0.935
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606343
Biotype: lincRNA
Gene id: ENSG00000272068
Gene Name: RP11-284F21.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3078-3096
0.052
0
6mer
783-806
0.002
2
XLOC_002286
hsa-miR-1294
0.935
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004414
Biotype: transcript isomorph
Gene id: XLOC_002286
Gene Name: XLOC_002286
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
257-276
0.054
1
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