LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
MEG3
hsa-miR-1294
0.957
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000423456
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1706-1729
0.045
5
7mer
175-200
0.006
0
6mer
956-964
0.006
5
6mer
65-88
0.004
1
C16orf82
hsa-miR-1294
0.955
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000505035
Biotype: lincRNA
Gene id: ENSG00000234186
Gene Name: C16orf82
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-156
0.040
4
8mer
2326-2336
0.019
1
6mer
818-834
0.002
2
XLOC_013064
hsa-miR-1294
0.955
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027536
Biotype: transcript isomorph
Gene id: XLOC_013064
Gene Name: XLOC_013064
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
410-428
0.031
1
6mer
2342-2362
0.012
1
6mer
2283-2305
0.009
1
6mer
1429-1451
0.005
1
7mer
506-531
0.005
0
RP11-144A16.6
hsa-miR-1294
0.954
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000611916
Biotype: lincRNA
Gene id: ENSG00000275628
Gene Name: RP11-144A16.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
289-302
0.054
0
6mer
1763-1788
0.004
0
6mer
798-814
0.003
0
MGC12916
hsa-miR-1294
0.953
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583262
Biotype: lincRNA
Gene id: ENSG00000266709
Gene Name: MGC12916
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1433-1453
0.060
0
CTA-390C10.10
hsa-miR-1294
0.953
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609475
Biotype: sense_intronic
Gene id: ENSG00000272977
Gene Name: CTA-390C10.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
299-324
0.060
1
LINC01347
hsa-miR-1294
0.953
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411733
Biotype: retained_intron
Gene id: ENSG00000214837
Gene Name: LINC01347
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
125-144
0.060
1
MEG3
hsa-miR-1294
0.952
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046471.1
Biotype: lincRNA
Gene id: NR_046471.1 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1398-1421
0.049
5
7mer
193-218
0.006
0
6mer
83-106
0.004
1
RP11-429J17.4
hsa-miR-1294
0.951
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000527579
Biotype: antisense
Gene id: ENSG00000254574
Gene Name: RP11-429J17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
168-184
0.034
5
8mer
92-108
0.025
0
LOC100133331
hsa-miR-1294
0.951
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028327.1
Biotype: lincRNA
Gene id: NR_028327.1 (gene)
Gene Name: LOC100133331
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3908-3929
0.014
0
7mer
3171-3190
0.006
Not Conserved
7mer
3803-3822
0.006
0
6mer
3972-3991
0.006
0
7mer
3685-3706
0.005
Not Conserved
7mer
3456-3479
0.004
Not Conserved
6mer
260-279
0.003
Not Conserved
7mer
393-412
0.003
Not Conserved
7mer
3654-3667
0.002
Not Conserved
7mer
2907-2926
0.002
Not Conserved
7mer
2509-2528
0.002
Not Conserved
7mer
2753-2780
0.001
Not Conserved
6mer
358-375
0.001
Not Conserved
6mer
3424-3443
0.001
Not Conserved
6mer
1686-1706
0.001
Not Conserved
7mer
1620-1640
0.001
Not Conserved
7mer
1572-1598
0.001
Not Conserved
6mer
2115-2134
0.001
Not Conserved
7mer
1475-1501
0.001
Not Conserved
6mer
1523-1548
0.000
Not Conserved
MEG3
hsa-miR-1294
0.951
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000398518
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1585-1608
0.043
5
7mer
174-199
0.006
0
6mer
955-963
0.006
5
6mer
64-87
0.004
1
XLOC_008329
hsa-miR-1294
0.951
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017592
Biotype: transcript isomorph
Gene id: XLOC_008329
Gene Name: XLOC_008329
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
532-549
0.019
0
6mer
271-288
0.014
0
6mer
505-522
0.014
0
6mer
148-169
0.012
0
RP11-15A1.7
hsa-miR-1294
0.950
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586860
Biotype: antisense
Gene id: ENSG00000266921
Gene Name: RP11-15A1.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
503-524
0.024
5
7mer
251-277
0.018
4
7mer
419-443
0.009
1
6mer
1943-1965
0.003
1
6mer
1532-1549
0.003
1
6mer
1749-1770
0.002
0
MEG3
hsa-miR-1294
0.950
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556736
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1586-1609
0.042
5
7mer
175-200
0.006
0
6mer
956-964
0.006
5
6mer
65-88
0.004
1
CTD-2291D10.2
hsa-miR-1294
0.948
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000565584
Biotype: lincRNA
Gene id: ENSG00000261558
Gene Name: CTD-2291D10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
182-202
0.045
0
6mer
61-84
0.013
0
LINC01001
hsa-miR-1294
0.947
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_028326.1
Biotype: lincRNA
Gene id: NR_028326.1 (gene)
Gene Name: LINC01001
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4249-4270
0.012
0
7mer
3512-3531
0.006
Not Conserved
6mer
4313-4332
0.005
0
7mer
4144-4163
0.005
0
7mer
4026-4047
0.004
Not Conserved
7mer
3797-3820
0.004
Not Conserved
6mer
260-279
0.003
Not Conserved
7mer
3995-4008
0.002
Not Conserved
7mer
393-412
0.002
Not Conserved
7mer
3248-3267
0.002
Not Conserved
7mer
2850-2869
0.002
Not Conserved
7mer
3094-3121
0.001
Not Conserved
6mer
358-375
0.001
Not Conserved
6mer
3765-3784
0.001
Not Conserved
7mer
1524-1548
0.001
Not Conserved
6mer
2027-2047
0.001
Not Conserved
7mer
1572-1597
0.001
Not Conserved
7mer
1816-1842
0.001
Not Conserved
7mer
1767-1792
0.001
Not Conserved
7mer
1670-1696
0.001
Not Conserved
7mer
1961-1981
0.001
Not Conserved
6mer
2456-2475
0.001
Not Conserved
7mer
1864-1889
0.001
Not Conserved
6mer
1914-1939
0.000
Not Conserved
6mer
1621-1648
0.000
Not Conserved
6mer
1718-1743
0.000
Not Conserved
6mer
1476-1500
0.000
Not Conserved
MEG3
hsa-miR-1294
0.946
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554639
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1591-1614
0.041
5
7mer
169-194
0.006
0
6mer
950-958
0.006
5
6mer
59-82
0.004
1
MEG3
hsa-miR-1294
0.946
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046467.1
Biotype: lincRNA
Gene id: NR_046467.1 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1642-1665
0.042
5
7mer
193-218
0.006
0
6mer
1012-1020
0.006
5
6mer
83-106
0.004
1
MEG3
hsa-miR-1294
0.945
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000519709
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1623-1646
0.042
5
7mer
167-192
0.006
0
6mer
948-956
0.005
5
6mer
57-80
0.004
1
XLOC_009026
hsa-miR-1294
0.944
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019822
Biotype: transcript isomorph
Gene id: XLOC_009026
Gene Name: XLOC_009026
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
174-198
0.057
0
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