LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
XLOC_002193
hsa-miR-1294
0.969
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003331
Biotype: transcript isomorph
Gene id: XLOC_002193
Gene Name: XLOC_002193
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
531-555
0.060
2
7mer
304-326
0.007
0
XLOC_008829
hsa-miR-1294
0.968
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018522
Biotype: transcript isomorph
Gene id: XLOC_008829
Gene Name: XLOC_008829
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
307-332
0.067
0
AC016683.5
hsa-miR-1294
0.968
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438409
Biotype: antisense
Gene id: ENSG00000234174
Gene Name: AC016683.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-289
0.052
5
6mer
329-347
0.010
6
6mer
391-409
0.005
3
RP11-646E18.2
hsa-miR-1294
0.966
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492416
Biotype: lincRNA
Gene id: ENSG00000238837
Gene Name: RP11-646E18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-37
0.062
3
6mer
184-199
0.004
0
LINC00938
hsa-miR-1294
0.966
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000609803
Biotype: lincRNA
Gene id: ENSG00000273015
Gene Name: LINC00938
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9498-9518
0.025
8
8mer
2285-2302
0.021
3
7mer
2607-2629
0.011
1
7mer
1006-1028
0.005
2
7mer
1152-1167
0.004
0
XLOC_013272
hsa-miR-1294
0.966
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027233
Biotype: transcript isomorph
Gene id: XLOC_013272
Gene Name: XLOC_013272
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
179-199
0.053
0
6mer
58-81
0.013
0
LINC00960
hsa-miR-1294
0.965
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492922
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1301-1326
0.040
1
7mer
605-628
0.016
0
6mer
1070-1094
0.009
1
C5orf64
hsa-miR-1294
0.964
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505642
Biotype: lincRNA
Gene id: ENSG00000178722
Gene Name: C5orf64
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2445-2467
0.049
4
7mer
677-695
0.006
0
6mer
33-54
0.004
1
6mer
605-621
0.003
1
6mer
952-977
0.002
3
XLOC_004362
hsa-miR-1294
0.963
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009934
Biotype: transcript isomorph
Gene id: XLOC_004362
Gene Name: XLOC_004362
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
7394-7407
0.027
0
7mer
369-395
0.017
0
7mer
3087-3107
0.006
0
8mer
4519-4539
0.005
Not Conserved
7mer
5740-5764
0.003
0
6mer
5662-5688
0.003
1
6mer
6222-6237
0.002
1
C5orf64
hsa-miR-1294
0.961
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000313303
Biotype: processed_transcript
Gene id: ENSG00000178722
Gene Name: C5orf64
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2370-2392
0.051
4
7mer
602-620
0.006
0
6mer
530-546
0.003
1
6mer
877-902
0.002
3
XLOC_008547
hsa-miR-1294
0.961
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018266
Biotype: transcript isomorph
Gene id: XLOC_008547
Gene Name: XLOC_008547
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-55
0.040
2
8mer
192-207
0.023
1
RP11-174J11.1
hsa-miR-1294
0.960
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451946
Biotype: lincRNA
Gene id: ENSG00000226426
Gene Name: RP11-174J11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-334
0.063
4
CTD-2623N2.5
hsa-miR-1294
0.959
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590046
Biotype: lincRNA
Gene id: ENSG00000266950
Gene Name: CTD-2623N2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-40
0.062
1
AC093642.4
hsa-miR-1294
0.959
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412193
Biotype: lincRNA
Gene id: ENSG00000226423
Gene Name: AC093642.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
414-435
0.062
0
RP11-336A10.2
hsa-miR-1294
0.959
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000596567
Biotype: antisense
Gene id: ENSG00000226647
Gene Name: RP11-336A10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
786-801
0.040
2
7mer
122-143
0.022
6
RP11-111F5.4
hsa-miR-1294
0.959
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000430302
Biotype: lincRNA
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
88-111
0.062
0
TRPM2-AS
hsa-miR-1294
0.958
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000456880
Biotype: antisense
Gene id: ENSG00000230061
Gene Name: TRPM2-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1992-2014
0.062
1
RP11-4L24.3
hsa-miR-1294
0.958
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000619442
Biotype: lincRNA
Gene id: ENSG00000275450
Gene Name: RP11-4L24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2915-2933
0.062
0
XLOC_013931
hsa-miR-1294
0.958
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028843
Biotype: transcript isomorph
Gene id: XLOC_013931
Gene Name: XLOC_013931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-66
0.056
0
6mer
1580-1600
0.006
0
MEG3
hsa-miR-1294
0.957
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000521404
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1342-1365
0.051
5
7mer
175-200
0.006
0
6mer
65-88
0.004
1
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