LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
PRG1
hsa-miR-1294
0.980
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_026881.1
Biotype: lincRNA
Gene id: NR_026881.1 (gene)
Gene Name: PRG1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
399-424
0.074
1
ASAP1-IT1
hsa-miR-1294
0.980
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_002765.2
Biotype: sense
Gene id: NR_002765.2 (gene)
Gene Name: ASAP1-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
179-201
0.074
1
LINC01002
hsa-miR-1294
0.979
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000614466
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
306-327
0.027
1
7mer
201-220
0.016
1
7mer
83-104
0.014
0
6mer
370-389
0.008
1
7mer
52-65
0.005
Not Conserved
6mer
662-683
0.003
Not Conserved
XLOC_006130
hsa-miR-1294
0.979
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013484
Biotype: transcript isomorph
Gene id: XLOC_006130
Gene Name: XLOC_006130
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-93
0.073
1
RP11-458F8.4
hsa-miR-1294
0.979
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000610177
Biotype: lincRNA
Gene id: ENSG00000273142
Gene Name: RP11-458F8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2460-2479
0.018
1
7mer
2775-2797
0.014
1
7mer
315-329
0.009
1
8mer
2873-2892
0.008
Not Conserved
7mer
3107-3123
0.007
0
7mer
2271-2292
0.004
0
6mer
3028-3041
0.004
0
6mer
892-911
0.003
0
6mer
992-1010
0.003
1
6mer
242-261
0.002
Not Conserved
6mer
1413-1434
0.001
0
RP11-401H2.1
hsa-miR-1294
0.977
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521294
Biotype: antisense
Gene id: ENSG00000253664
Gene Name: RP11-401H2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
174-189
0.072
1
LINC01002
hsa-miR-1294
0.977
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000617662
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
326-347
0.029
1
7mer
221-240
0.015
1
7mer
103-124
0.014
0
6mer
390-409
0.009
1
7mer
72-85
0.005
Not Conserved
LINC01002
hsa-miR-1294
0.977
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000622667
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
273-294
0.028
1
7mer
168-187
0.017
1
7mer
50-71
0.015
0
6mer
337-356
0.007
1
7mer
19-32
0.005
Not Conserved
AC138035.2
hsa-miR-1294
0.975
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000604354
Biotype: lincRNA
Gene id: ENSG00000238035
Gene Name: AC138035.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
551-572
0.021
1
7mer
1001-1024
0.015
0
7mer
658-677
0.013
1
6mer
489-508
0.007
1
7mer
774-795
0.006
Not Conserved
6mer
1037-1056
0.005
0
7mer
813-826
0.004
Not Conserved
RP1-71H24.6
hsa-miR-1294
0.975
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000614658
Biotype: lincRNA
Gene id: ENSG00000276343
Gene Name: RP1-71H24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
388-411
0.071
1
RP11-154D6.1
hsa-miR-1294
0.974
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000586232
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
350-372
0.051
1
7mer
498-513
0.019
1
XLOC_006663
hsa-miR-1294
0.974
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014019
Biotype: transcript isomorph
Gene id: XLOC_006663
Gene Name: XLOC_006663
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
377-401
0.055
0
7mer
2989-3007
0.005
Not Conserved
6mer
562-579
0.005
1
6mer
1404-1421
0.002
2
6mer
933-954
0.001
1
6mer
1547-1569
0.001
0
6mer
1227-1245
0.001
0
RP11-154D6.1
hsa-miR-1294
0.974
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000423255
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
341-363
0.070
1
LINC01002
hsa-miR-1294
0.973
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000616947
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
112-133
0.034
1
7mer
7-26
0.020
1
6mer
176-195
0.009
1
6mer
468-489
0.006
0
MEG3
hsa-miR-1294
0.971
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000451743
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1456-1479
0.050
5
6mer
956-964
0.007
5
7mer
175-200
0.006
0
6mer
65-88
0.004
1
MEG3
hsa-miR-1294
0.971
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000398474
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1605-1628
0.042
5
7mer
526-552
0.020
4
6mer
855-863
0.006
5
MEG3
hsa-miR-1294
0.970
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046465.2
Biotype: lincRNA
Gene id: NR_046465.2 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1512-1535
0.049
5
6mer
1012-1020
0.008
5
7mer
193-218
0.006
0
6mer
83-106
0.004
1
MEG3
hsa-miR-1294
0.970
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_002766.2
Biotype: lincRNA
Gene id: NR_002766.2 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1474-1497
0.049
5
6mer
974-982
0.008
5
7mer
193-218
0.006
0
6mer
83-106
0.004
1
XLOC_002527
hsa-miR-1294
0.970
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004618
Biotype: transcript isomorph
Gene id: XLOC_002527
Gene Name: XLOC_002527
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-148
0.016
0
6mer
383-398
0.007
2
6mer
348-369
0.007
1
6mer
102-115
0.005
0
6mer
6-32
0.004
0
6mer
79-94
0.004
0
6mer
147-159
0.004
Not Conserved
6mer
167-193
0.004
0
6mer
264-283
0.004
0
6mer
208-225
0.004
Not Conserved
6mer
254-271
0.003
0
6mer
59-80
0.003
Not Conserved
XLOC_012416
hsa-miR-1294
0.969
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025586
Biotype: transcript isomorph
Gene id: XLOC_012416
Gene Name: XLOC_012416
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
366-391
0.067
0
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