LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
XLOC_010012
hsa-miR-1294
0.913
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020713
Biotype: transcript isomorph
Gene id: XLOC_010012
Gene Name: XLOC_010012
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-162
0.049
1
XLOC_007135
hsa-miR-1294
0.913
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014559
Biotype: transcript isomorph
Gene id: XLOC_007135
Gene Name: XLOC_007135
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
526-545
0.036
1
6mer
162-181
0.006
1
6mer
424-438
0.003
1
6mer
1191-1215
0.002
Not Conserved
6mer
992-1015
0.002
0
6mer
1149-1174
0.001
0
AP000688.29
hsa-miR-1294
0.913
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000422473
Biotype: lincRNA
Gene id: ENSG00000233393
Gene Name: AP000688.29
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-66
0.043
0
6mer
1357-1377
0.006
0
XLOC_003873
hsa-miR-1294
0.912
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008418
Biotype: transcript isomorph
Gene id: XLOC_003873
Gene Name: XLOC_003873
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-194
0.033
0
6mer
91-111
0.016
0
XLOC_007112
hsa-miR-1294
0.912
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015032
Biotype: transcript isomorph
Gene id: XLOC_007112
Gene Name: XLOC_007112
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-92
0.049
6
RP11-705C15.4
hsa-miR-1294
0.911
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546259
Biotype: antisense
Gene id: ENSG00000256442
Gene Name: RP11-705C15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
147-168
0.049
1
FAM224A
hsa-miR-1294
0.911
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000419557
Biotype: lincRNA
Gene id: ENSG00000233522
Gene Name: FAM224A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1377-1402
0.049
0
PRNT
hsa-miR-1294
0.911
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_024268.1
Biotype: sense
Gene id: NR_024268.1 (gene)
Gene Name: PRNT
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1935-1961
0.046
0
6mer
702-723
0.003
1
XLOC_012720
hsa-miR-1294
0.910
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026369
Biotype: transcript isomorph
Gene id: XLOC_012720
Gene Name: XLOC_012720
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4600-4614
0.026
1
9mer
3280-3300
0.019
1
6mer
1934-1957
0.001
1
6mer
2235-2247
0.001
0
6mer
3427-3445
0.001
1
STARD13-AS
hsa-miR-1294
0.909
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609615
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
305-324
0.048
1
STARD13-AS
hsa-miR-1294
0.908
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609995
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
311-330
0.048
1
AC096649.3
hsa-miR-1294
0.908
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438963
Biotype: lincRNA
Gene id: ENSG00000229066
Gene Name: AC096649.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-349
0.040
13
7mer
34-56
0.008
Not Conserved
RP11-448G15.3
hsa-miR-1294
0.906
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000561486
Biotype: sense_overlapping
Gene id: ENSG00000261490
Gene Name: RP11-448G15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
420-443
0.039
0
7mer
3364-3382
0.009
1
CTD-2003C8.2
hsa-miR-1294
0.906
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533941
Biotype: lincRNA
Gene id: ENSG00000250041
Gene Name: CTD-2003C8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
164-186
0.036
4
7mer
81-100
0.011
1
RP11-111F5.4
hsa-miR-1294
0.904
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000412631
Biotype: lincRNA
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-115
0.047
0
RP11-789C1.1
hsa-miR-1294
0.904
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504509
Biotype: lincRNA
Gene id: ENSG00000250266
Gene Name: RP11-789C1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-192
0.024
2
7mer
299-321
0.024
Not Conserved
XLOC_009582
hsa-miR-1294
0.903
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020142
Biotype: transcript isomorph
Gene id: XLOC_009582
Gene Name: XLOC_009582
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
993-1018
0.026
1
9mer
596-618
0.022
1
FLJ36777
hsa-miR-1294
0.903
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000501888
Biotype: lincRNA
Gene id: ENSG00000245468
Gene Name: FLJ36777
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1724-1742
0.036
1
6mer
1902-1908
0.009
1
6mer
1249-1273
0.002
Not Conserved
RP11-375N15.2
hsa-miR-1294
0.902
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607598
Biotype: antisense
Gene id: ENSG00000272267
Gene Name: RP11-375N15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
343-365
0.044
1
6mer
742-768
0.003
8
XLOC_008669
hsa-miR-1294
0.901
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018389
Biotype: transcript isomorph
Gene id: XLOC_008669
Gene Name: XLOC_008669
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-73
0.047
1
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