LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
EIF3J-AS1
hsa-miR-128-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000313807
Biotype: lincRNA
Gene id: ENSG00000179523
Gene Name: EIF3J-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2612-2639
0.031
1
8mer
2199-2209
0.029
4
7mer
1831-1841
0.001
Not Conserved
RP11-13N12.2
hsa-miR-128-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521055
Biotype: lincRNA
Gene id: ENSG00000253184
Gene Name: RP11-13N12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
162-184
0.061
3
SCHLAP1
hsa-miR-128-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_104320.1
Biotype: lincRNA
Gene id: NR_104320.1 (gene)
Gene Name: SCHLAP1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
995-1014
0.052
1
7mer
1300-1311
0.005
Not Conserved
7mer
1311-1338
0.004
0
MIAT
hsa-miR-128-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000613780
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
795-811
0.028
2
8mer
230-249
0.027
1
6mer
4444-4464
0.002
1
6mer
6216-6230
0.002
1
6mer
3568-3586
0.001
1
6mer
5204-5219
0.001
Not Conserved
ERI3-IT1
hsa-miR-128-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414156
Biotype: sense_intronic
Gene id: ENSG00000233602
Gene Name: ERI3-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
473-496
0.061
1
XLOC_011604
hsa-miR-128-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023827
Biotype: transcript isomorph
Gene id: XLOC_011604
Gene Name: XLOC_011604
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2341-2362
0.029
0
7mer
4-17
0.016
1
7mer
2221-2245
0.010
0
6mer
778-789
0.003
1
6mer
2412-2437
0.003
Not Conserved
XLOC_000515
hsa-miR-128-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000061
Biotype: transcript isomorph
Gene id: XLOC_000515
Gene Name: XLOC_000515
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
665-690
0.038
3
8mer
1486-1504
0.023
2
SCHLAP1
hsa-miR-128-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_104321.1
Biotype: lincRNA
Gene id: NR_104321.1 (gene)
Gene Name: SCHLAP1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
728-747
0.052
1
7mer
1033-1044
0.005
Not Conserved
7mer
1044-1071
0.004
0
XXbac-BPG249D20.9
hsa-miR-128-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415195
Biotype: antisense
Gene id: ENSG00000235781
Gene Name: XXbac-BPG249D20.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
393-411
0.038
0
9mer
520-537
0.016
Not Conserved
6mer
22-34
0.007
1
SCHLAP1
hsa-miR-128-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_104324.1
Biotype: lincRNA
Gene id: NR_104324.1 (gene)
Gene Name: SCHLAP1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1096-1115
0.051
1
7mer
1401-1412
0.005
Not Conserved
7mer
1412-1439
0.004
0
RP11-299J3.8
hsa-miR-128-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608756
Biotype: antisense
Gene id: ENSG00000272758
Gene Name: RP11-299J3.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
390-412
0.054
8
6mer
805-830
0.007
9
PWRN2
hsa-miR-128-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567246
Biotype: lincRNA
Gene id: ENSG00000260551
Gene Name: PWRN2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1222-1237
0.028
1
8mer
855-875
0.013
0
8mer
1112-1133
0.008
1
6mer
4104-4121
0.004
0
6mer
2694-2719
0.003
1
6mer
4146-4165
0.003
0
7mer
2329-2343
0.001
Not Conserved
LINC00475
hsa-miR-128-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000416438
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-330
0.030
0
8mer
784-800
0.020
0
8mer
1393-1410
0.006
Not Conserved
6mer
525-542
0.004
0
MIR4534
hsa-miR-128-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1536-1553
0.008
0
9mer
45963-45983
0.006
0
8mer
21562-21582
0.003
0
7mer
51955-51980
0.003
1
7mer
24683-24708
0.003
2
7mer
13813-13831
0.002
Not Conserved
7mer
51492-51503
0.002
2
7mer
51567-51585
0.002
0
6mer
30442-30446
0.001
1
7mer
15493-15509
0.001
0
6mer
16899-16926
0.001
1
6mer
19533-19546
0.001
3
6mer
32649-32663
0.001
1
7mer
16498-16513
0.001
0
7mer
21212-21238
0.001
Not Conserved
7mer
17613-17627
0.001
1
6mer
24353-24379
0.001
3
6mer
18552-18568
0.001
0
6mer
44957-44981
0.001
1
6mer
4037-4052
0.001
2
6mer
4764-4791
0.001
2
6mer
18746-18763
0.001
6
6mer
38027-38040
0.001
2
6mer
40421-40446
0.001
2
6mer
9955-9973
0.001
Not Conserved
6mer
42155-42174
0.001
1
6mer
33268-33283
0.001
0
6mer
51345-51370
0.001
1
6mer
17946-17963
0.001
1
6mer
44522-44543
0.001
1
6mer
23251-23270
0.001
2
6mer
26807-26833
0.001
2
6mer
39456-39464
0.001
0
6mer
25397-25418
0.001
1
6mer
33409-33435
0.001
1
6mer
13439-13465
0.001
0
6mer
24731-24748
0.001
1
6mer
18611-18625
0.000
1
XLOC_011484
hsa-miR-128-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023685
Biotype: transcript isomorph
Gene id: XLOC_011484
Gene Name: XLOC_011484
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2764-2782
0.037
0
7mer
1907-1918
0.016
0
6mer
2314-2326
0.007
0
RP11-223P11.2
hsa-miR-128-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000420941
Biotype: antisense
Gene id: ENSG00000232935
Gene Name: RP11-223P11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
207-232
0.060
2
RP1-63G5.7
hsa-miR-128-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000445088
Biotype: sense_intronic
Gene id: ENSG00000237862
Gene Name: RP1-63G5.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
827-852
0.055
1
6mer
1183-1209
0.004
2
CTA-228A9.4
hsa-miR-128-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-82
0.022
1
7mer
20320-20325
0.011
0
7mer
861-873
0.010
2
7mer
19110-19132
0.004
1
6mer
15225-15239
0.002
4
6mer
3306-3319
0.002
5
6mer
19065-19081
0.002
1
7mer
17613-17628
0.001
Not Conserved
6mer
2009-2023
0.001
2
7mer
16105-16123
0.001
0
6mer
10353-10377
0.001
2
6mer
914-938
0.001
1
6mer
17003-17014
0.001
1
6mer
7660-7683
0.001
0
XLOC_014368
hsa-miR-128-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029349
Biotype: transcript isomorph
Gene id: XLOC_014368
Gene Name: XLOC_014368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
823-848
0.055
1
6mer
1179-1205
0.004
2
RP11-147C23.1
hsa-miR-128-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624750
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
647-666
0.060
2
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