LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP4-655J12.4
hsa-miR-128-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434879
Biotype: lincRNA
Gene id: ENSG00000233154
Gene Name: RP4-655J12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-36
0.064
1
LINC00518
hsa-miR-128-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000487130
Biotype: lincRNA
Gene id: ENSG00000183674
Gene Name: LINC00518
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
58-75
0.051
1
7mer
791-806
0.009
2
6mer
362-378
0.003
1
RP3-467K16.7
hsa-miR-128-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439788
Biotype: antisense
Gene id: ENSG00000236045
Gene Name: RP3-467K16.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
294-320
0.056
0
7mer
484-504
0.007
0
RP11-290F5.2
hsa-miR-128-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511465
Biotype: lincRNA
Gene id: ENSG00000180712
Gene Name: RP11-290F5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Colon Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
409-427
0.064
2
RP11-147C23.1
hsa-miR-128-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000593954
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
561-580
0.063
2
LINC00475
hsa-miR-128-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_027341.1
Biotype: lincRNA
Gene id: NR_027341.1 (gene)
Gene Name: LINC00475
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-330
0.030
0
8mer
784-800
0.020
0
8mer
1393-1410
0.009
Not Conserved
6mer
525-542
0.004
0
SCHLAP1
hsa-miR-128-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_104323.1
Biotype: lincRNA
Gene id: NR_104323.1 (gene)
Gene Name: SCHLAP1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1202-1221
0.053
1
7mer
1507-1518
0.006
Not Conserved
7mer
1518-1545
0.004
0
AC005154.6
hsa-miR-128-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000454922
Biotype: antisense
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1339-1354
0.056
2
6mer
173-197
0.007
1
XLOC_011359
hsa-miR-128-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023517
Biotype: transcript isomorph
Gene id: XLOC_011359
Gene Name: XLOC_011359
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
912-936
0.035
0
7mer
133-153
0.014
1
6mer
755-773
0.004
1
6mer
508-533
0.004
1
6mer
687-702
0.003
1
6mer
712-730
0.003
2
XLOC_013881
hsa-miR-128-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028974
Biotype: transcript isomorph
Gene id: XLOC_013881
Gene Name: XLOC_013881
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
46-72
0.063
1
RP11-216N14.8
hsa-miR-128-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453778
Biotype: antisense
Gene id: ENSG00000243613
Gene Name: RP11-216N14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-126
0.063
6
RP11-352E8.2
hsa-miR-128-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608631
Biotype: lincRNA
Gene id: ENSG00000272859
Gene Name: RP11-352E8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-185
0.045
0
7mer
324-329
0.012
0
6mer
62-75
0.005
0
XLOC_011750
hsa-miR-128-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024433
Biotype: transcript isomorph
Gene id: XLOC_011750
Gene Name: XLOC_011750
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
638-656
0.062
1
XLOC_005906
hsa-miR-128-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011606
Biotype: transcript isomorph
Gene id: XLOC_005906
Gene Name: XLOC_005906
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
907-923
0.052
0
6mer
732-742
0.010
0
RP11-317J10.2
hsa-miR-128-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521761
Biotype: antisense
Gene id: ENSG00000253549
Gene Name: RP11-317J10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-47
0.050
6
7mer
210-225
0.012
1
NEAT1
hsa-miR-128-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6892-6910
0.016
1
8mer
20501-20514
0.005
1
7mer
2710-2731
0.005
0
6mer
22704-22718
0.005
0
7mer
12266-12280
0.003
2
6mer
22453-22469
0.003
1
6mer
496-510
0.003
1
7mer
13827-13843
0.003
0
8mer
4745-4768
0.002
Not Conserved
6mer
7327-7339
0.002
2
6mer
17451-17462
0.002
1
7mer
17204-17218
0.002
0
7mer
18636-18659
0.002
1
7mer
15201-15216
0.001
0
6mer
14040-14056
0.001
0
6mer
13107-13121
0.001
2
6mer
11737-11750
0.001
0
6mer
21293-21319
0.001
3
6mer
5884-5898
0.001
0
6mer
8284-8295
0.001
Not Conserved
6mer
21443-21469
0.001
Not Conserved
6mer
8335-8354
0.001
0
TUG1
hsa-miR-128-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000519077
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
845-871
0.042
8
6mer
284-298
0.009
7
6mer
573-593
0.003
3
6mer
4492-4515
0.002
1
6mer
4881-4890
0.002
1
6mer
1785-1795
0.002
2
6mer
1504-1526
0.001
0
EIF3J-AS1
hsa-miR-128-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_034170.1
Biotype: lincRNA
Gene id: NR_034170.1 (gene)
Gene Name: EIF3J-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1600-1627
0.031
1
8mer
1187-1197
0.029
4
7mer
819-829
0.002
Not Conserved
SCHLAP1
hsa-miR-128-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_104322.1
Biotype: lincRNA
Gene id: NR_104322.1 (gene)
Gene Name: SCHLAP1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1303-1322
0.052
1
7mer
1608-1619
0.005
Not Conserved
7mer
1619-1646
0.004
0
SCHLAP1
hsa-miR-128-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_104325.1
Biotype: lincRNA
Gene id: NR_104325.1 (gene)
Gene Name: SCHLAP1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1165-1184
0.052
1
7mer
1470-1481
0.005
Not Conserved
7mer
1481-1508
0.004
0
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