LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
LINC01085
hsa-miR-128-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506739
Biotype: lincRNA
Gene id: ENSG00000248698
Gene Name: LINC01085
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1043-1056
0.063
2
6mer
870-879
0.003
1
RP11-147L13.14
hsa-miR-128-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000612725
Biotype: lincRNA
Gene id: ENSG00000278740
Gene Name: RP11-147L13.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
243-256
0.066
0
XLOC_001191
hsa-miR-128-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002578
Biotype: transcript isomorph
Gene id: XLOC_001191
Gene Name: XLOC_001191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
502-516
0.060
2
7mer
713-724
0.005
0
XLOC_008301
hsa-miR-128-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017580
Biotype: transcript isomorph
Gene id: XLOC_008301
Gene Name: XLOC_008301
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1321-1326
0.052
0
6mer
16-42
0.013
0
XLOC_008302
hsa-miR-128-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017581
Biotype: transcript isomorph
Gene id: XLOC_008302
Gene Name: XLOC_008302
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1321-1326
0.052
0
6mer
16-42
0.013
0
TTTY4
hsa-miR-128-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000436568
Biotype: lincRNA
Gene id: ENSG00000226906
Gene Name: TTTY4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1321-1326
0.052
0
6mer
16-42
0.013
0
TTTY4C
hsa-miR-128-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000456123
Biotype: lincRNA
Gene id: ENSG00000228296
Gene Name: TTTY4C
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
21-26
0.052
0
6mer
1305-1331
0.013
0
XLOC_008332
hsa-miR-128-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017595
Biotype: transcript isomorph
Gene id: XLOC_008332
Gene Name: XLOC_008332
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-25
0.052
0
6mer
1304-1330
0.013
0
TTTY4B
hsa-miR-128-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000420149
Biotype: lincRNA
Gene id: ENSG00000235412
Gene Name: TTTY4B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1321-1326
0.052
0
6mer
16-42
0.013
0
TUG1
hsa-miR-128-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000602393
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
723-749
0.059
8
6mer
1677-1687
0.004
2
6mer
1396-1418
0.002
0
C22orf34
hsa-miR-128-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000343999
Biotype: lincRNA
Gene id: ENSG00000188511
Gene Name: C22orf34
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2496-2521
0.014
1
8mer
2418-2438
0.009
1
8mer
2457-2477
0.008
1
8mer
1802-1811
0.006
Not Conserved
8mer
2380-2405
0.006
0
8mer
2342-2367
0.005
0
8mer
2265-2290
0.005
0
8mer
2303-2328
0.005
0
7mer
2533-2559
0.005
1
6mer
1142-1158
0.001
0
SCHLAP1
hsa-miR-128-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_104319.1
Biotype: lincRNA
Gene id: NR_104319.1 (gene)
Gene Name: SCHLAP1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1064-1083
0.055
1
7mer
1369-1380
0.006
Not Conserved
7mer
1380-1407
0.004
0
XLOC_005419
hsa-miR-128-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012566
Biotype: transcript isomorph
Gene id: XLOC_005419
Gene Name: XLOC_005419
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
171-184
0.033
1
9mer
239-258
0.032
0
XLOC_006904
hsa-miR-128-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014836
Biotype: transcript isomorph
Gene id: XLOC_006904
Gene Name: XLOC_006904
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-45
0.055
2
7mer
20-36
0.009
0
XLOC_009788
hsa-miR-128-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020456
Biotype: transcript isomorph
Gene id: XLOC_009788
Gene Name: XLOC_009788
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3369-3375
0.024
8
7mer
352-358
0.021
4
7mer
810-825
0.010
1
7mer
1131-1146
0.004
0
7mer
1795-1819
0.002
0
6mer
2403-2427
0.002
1
6mer
1699-1720
0.001
0
6mer
1733-1759
0.001
0
RP4-798A10.7
hsa-miR-128-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562878
Biotype: lincRNA
Gene id: ENSG00000261135
Gene Name: RP4-798A10.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
601-617
0.064
1
RP4-657D16.3
hsa-miR-128-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000588291
Biotype: antisense
Gene id: ENSG00000266993
Gene Name: RP4-657D16.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
366-386
0.044
6
8mer
86-106
0.020
0
DKFZp434L192
hsa-miR-128-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_026929.1
Biotype: lincRNA
Gene id: NR_026929.1 (gene)
Gene Name: DKFZp434L192
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
98-111
0.048
1
6mer
162-181
0.016
1
TUG1
hsa-miR-128-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000569149
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
597-623
0.059
8
6mer
200-220
0.005
3
RP11-379K22.2
hsa-miR-128-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558208
Biotype: antisense
Gene id: ENSG00000259175
Gene Name: RP11-379K22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
392-399
0.050
2
7mer
678-683
0.011
3
6mer
2111-2121
0.003
1
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