LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
LINC01000
hsa-miR-128-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024368.1
Biotype: lincRNA
Gene id: NR_024368.1 (gene)
Gene Name: LINC01000
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10118-10124
0.052
1
8mer
834-851
0.006
0
8mer
1745-1768
0.004
Not Conserved
6mer
9712-9734
0.003
0
7mer
5190-5200
0.002
1
6mer
9128-9133
0.002
0
7mer
7017-7036
0.001
Not Conserved
6mer
7053-7077
0.000
0
RP3-402G11.27
hsa-miR-128-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000610050
Biotype: antisense
Gene id: ENSG00000272836
Gene Name: RP3-402G11.27
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-43
0.064
1
6mer
436-450
0.006
1
RP11-797H7.5
hsa-miR-128-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000340779
Biotype: antisense
Gene id: ENSG00000189316
Gene Name: RP11-797H7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-68
0.061
1
6mer
319-332
0.009
1
bP-2189O9.3
hsa-miR-128-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623794
Biotype: lincRNA
Gene id: ENSG00000279579
Gene Name: bP-2189O9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
506-531
0.055
0
6mer
651-673
0.014
0
FLJ37201
hsa-miR-128-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000455699
Biotype: lincRNA
Gene id: ENSG00000240996
Gene Name: FLJ37201
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-212
0.053
1
7mer
129-145
0.012
Not Conserved
6mer
467-486
0.005
3
SPTY2D1-AS1
hsa-miR-128-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_038360.1
Biotype: antisense
Gene id: NR_038360.1 (gene)
Gene Name: SPTY2D1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-90
0.066
5
6mer
790-804
0.003
5
AC093627.10
hsa-miR-128-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000471299
Biotype: lincRNA
Gene id: ENSG00000240859
Gene Name: AC093627.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
717-730
0.052
1
8mer
767-780
0.017
Not Conserved
SPTY2D1-AS1
hsa-miR-128-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501599
Biotype: antisense
Gene id: ENSG00000247595
Gene Name: SPTY2D1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-107
0.065
5
6mer
807-821
0.003
5
LL22NC03-22D1.1
hsa-miR-128-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9587-9607
0.018
0
8mer
12849-12861
0.009
Not Conserved
8mer
24204-24230
0.007
3
7mer
654-681
0.005
1
7mer
3311-3317
0.005
0
7mer
6486-6510
0.003
1
6mer
28396-28416
0.003
1
6mer
577-602
0.003
0
6mer
27889-27908
0.002
0
6mer
6007-6028
0.002
1
6mer
24610-24636
0.002
0
6mer
6823-6832
0.002
3
6mer
23662-23688
0.002
1
6mer
19036-19059
0.001
0
6mer
12013-12024
0.001
0
6mer
11308-11330
0.001
0
6mer
25900-25912
0.001
0
6mer
2887-2907
0.001
1
6mer
2312-2329
0.001
1
LINC01516
hsa-miR-128-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000436140
Biotype: lincRNA
Gene id: ENSG00000231422
Gene Name: LINC01516
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2783-2798
0.032
2
9mer
981-992
0.030
3
6mer
320-341
0.004
1
6mer
1460-1483
0.002
6
AC004447.2
hsa-miR-128-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594142
Biotype: antisense
Gene id: ENSG00000269131
Gene Name: AC004447.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-282
0.049
4
7mer
1847-1863
0.013
1
6mer
2122-2139
0.003
1
7mer
1434-1449
0.002
Not Conserved
TUG1
hsa-miR-128-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000566220
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
794-820
0.055
8
6mer
302-316
0.009
7
6mer
591-611
0.004
3
XLOC_005083
hsa-miR-128-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010556
Biotype: transcript isomorph
Gene id: XLOC_005083
Gene Name: XLOC_005083
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-281
0.035
1
8mer
254-268
0.032
1
XLOC_001751
hsa-miR-128-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003048
Biotype: transcript isomorph
Gene id: XLOC_001751
Gene Name: XLOC_001751
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
411-426
0.025
1
7mer
1530-1553
0.022
1
7mer
385-399
0.020
0
RP11-344E13.3
hsa-miR-128-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577860
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
683-697
0.067
0
RP11-250B2.3
hsa-miR-128-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000443221
Biotype: lincRNA
Gene id: ENSG00000233967
Gene Name: RP11-250B2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
103-118
0.057
2
7mer
16-40
0.010
1
LINC00680
hsa-miR-128-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422882
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1673-1692
0.059
0
6mer
2048-2071
0.008
0
RP11-52L5.6
hsa-miR-128-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607269
Biotype: antisense
Gene id: ENSG00000271776
Gene Name: RP11-52L5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3346-3364
0.044
11
7mer
3239-3257
0.012
7
8mer
2550-2570
0.011
Not Conserved
CITF22-1A6.3
hsa-miR-128-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000610245
Biotype: lincRNA
Gene id: ENSG00000273192
Gene Name: CITF22-1A6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
171-193
0.006
0
7mer
104-115
0.006
0
7mer
268-290
0.005
Not Conserved
7mer
61-80
0.005
0
7mer
202-223
0.005
Not Conserved
7mer
372-393
0.004
0
7mer
440-461
0.004
0
7mer
583-604
0.004
0
7mer
343-354
0.003
0
7mer
310-321
0.003
0
7mer
515-526
0.003
0
7mer
232-253
0.003
Not Conserved
7mer
413-424
0.003
0
7mer
470-491
0.002
Not Conserved
7mer
613-634
0.002
0
7mer
658-669
0.002
Not Conserved
6mer
1062-1075
0.002
1
7mer
726-747
0.002
Not Conserved
6mer
1078-1095
0.001
1
RP11-344E13.3
hsa-miR-128-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577968
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
295-309
0.066
0
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