LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
AC006548.28
hsa-miR-128-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38685-38709
0.006
3
9mer
21270-21295
0.006
0
6mer
43-65
0.006
1
8mer
70309-70321
0.006
0
8mer
22783-22809
0.006
0
9mer
58043-58054
0.004
1
8mer
61548-61566
0.004
0
8mer
5823-5840
0.004
0
7mer
27753-27776
0.003
0
7mer
68234-68246
0.003
Not Conserved
7mer
40065-40083
0.002
0
6mer
84027-84047
0.002
1
7mer
35044-35064
0.002
1
7mer
18506-18532
0.002
0
6mer
55396-55419
0.002
1
6mer
60969-60990
0.002
1
6mer
15877-15899
0.002
2
6mer
68591-68605
0.002
0
8mer
37958-37978
0.002
0
6mer
44837-44847
0.002
Not Conserved
6mer
72899-72907
0.002
0
6mer
67169-67189
0.002
0
6mer
29559-29582
0.002
1
6mer
904-915
0.002
0
6mer
35958-35968
0.002
1
6mer
18719-18739
0.002
1
7mer
8436-8449
0.002
1
6mer
16528-16540
0.001
0
6mer
8740-8747
0.001
2
6mer
12649-12675
0.001
6
6mer
20185-20195
0.001
1
7mer
9506-9520
0.001
1
6mer
78668-78691
0.001
0
6mer
82117-82136
0.001
1
8mer
13306-13321
0.001
1
6mer
77588-77606
0.001
0
6mer
28495-28508
0.001
1
6mer
32959-32977
0.001
Not Conserved
6mer
21784-21807
0.001
0
6mer
33165-33192
0.001
0
6mer
59809-59821
0.001
1
6mer
41968-41982
0.001
1
6mer
54141-54154
0.001
Not Conserved
6mer
11670-11696
0.001
0
6mer
22109-22129
0.001
1
6mer
13406-13421
0.001
0
6mer
10512-10531
0.001
1
6mer
38906-38928
0.001
1
6mer
38348-38375
0.001
2
6mer
9558-9584
0.001
1
6mer
14329-14343
0.001
1
6mer
75144-75155
0.001
0
6mer
16187-16196
0.001
0
6mer
61410-61423
0.001
1
7mer
65395-65417
0.001
0
6mer
37076-37098
0.001
1
6mer
5718-5739
0.001
3
6mer
13582-13603
0.001
1
7mer
22069-22086
0.001
1
6mer
5765-5777
0.001
0
6mer
58206-58220
0.001
1
6mer
37138-37163
0.001
0
6mer
42703-42722
0.001
0
6mer
21615-21636
0.001
0
6mer
42657-42676
0.001
0
6mer
37019-37040
0.000
0
6mer
13321-13338
0.000
0
6mer
40050-40064
0.000
Not Conserved
6mer
42698-42722
0.000
0
RP11-473M20.9
hsa-miR-128-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000577123
Biotype: lincRNA
Gene id: ENSG00000262370
Gene Name: RP11-473M20.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
362-374
0.118
0
RP11-95O2.5
hsa-miR-128-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589281
Biotype: antisense
Gene id: ENSG00000267707
Gene Name: RP11-95O2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
350-356
0.100
9
6mer
438-449
0.012
10
RP4-760C5.5
hsa-miR-128-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000449316
Biotype: lincRNA
Gene id: ENSG00000226203
Gene Name: RP4-760C5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4579-4593
0.059
0
8mer
1076-1082
0.025
0
6mer
30-47
0.004
Not Conserved
6mer
4058-4078
0.004
0
6mer
897-915
0.003
0
6mer
1232-1254
0.003
0
6mer
2941-2959
0.003
0
6mer
3292-3305
0.002
0
6mer
2774-2788
0.002
0
6mer
2427-2445
0.002
0
6mer
1750-1768
0.002
0
XLOC_008328
hsa-miR-128-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017652
Biotype: transcript isomorph
Gene id: XLOC_008328
Gene Name: XLOC_008328
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
457-480
0.095
0
6mer
1277-1286
0.014
0
XLOC_013502
hsa-miR-128-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027863
Biotype: transcript isomorph
Gene id: XLOC_013502
Gene Name: XLOC_013502
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4574-4588
0.058
0
8mer
1071-1077
0.025
0
6mer
25-42
0.004
Not Conserved
6mer
4053-4073
0.004
0
6mer
892-910
0.003
0
6mer
1227-1249
0.003
0
6mer
2936-2954
0.002
0
6mer
3287-3300
0.002
0
6mer
2769-2783
0.002
0
6mer
2422-2440
0.002
0
6mer
1745-1763
0.002
0
RP11-108M9.1
hsa-miR-128-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422345
Biotype: lincRNA
Gene id: ENSG00000223643
Gene Name: RP11-108M9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
627-652
0.077
0
7mer
267-277
0.031
0
LINC01005
hsa-miR-128-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000441691
Biotype: antisense
Gene id: ENSG00000228564
Gene Name: LINC01005
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
383-395
0.108
1
MIR3179-3
hsa-miR-128-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000552753
Biotype: lincRNA
Gene id: ENSG00000257527
Gene Name: MIR3179-3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
106-123
0.107
2
U91328.20
hsa-miR-128-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607586
Biotype: lincRNA
Gene id: ENSG00000272065
Gene Name: U91328.20
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
84-97
0.100
1
6mer
130-143
0.006
1
RP13-554M15.8
hsa-miR-128-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613771
Biotype: lincRNA
Gene id: ENSG00000277186
Gene Name: RP13-554M15.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
526-551
0.055
0
7mer
255-281
0.050
0
RP11-508N22.12
hsa-miR-128-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608335
Biotype: lincRNA
Gene id: ENSG00000272983
Gene Name: RP11-508N22.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6462-6483
0.041
1
8mer
6259-6285
0.021
0
8mer
1986-1997
0.012
0
7mer
778-789
0.010
1
6mer
6919-6935
0.010
1
6mer
6649-6676
0.005
1
6mer
336-353
0.004
0
PCAT14
hsa-miR-128-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_109832.1
Biotype: lincRNA
Gene id: NR_109832.1 (gene)
Gene Name: PCAT14
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
487-508
0.073
0
7mer
741-759
0.030
0
LINC00614
hsa-miR-128-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000433966
Biotype: lincRNA
Gene id: ENSG00000236983
Gene Name: LINC00614
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-173
0.103
1
AC008088.4
hsa-miR-128-3p
0.996
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000563569
Biotype: lincRNA
Gene id: ENSG00000260907
Gene Name: AC008088.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
756-781
0.100
1
PRKXP1
hsa-miR-128-3p
0.995
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000602585
Biotype: lincRNA
Gene id: ENSG00000270127
Gene Name: PRKXP1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
262-275
0.052
0
8mer
2014-2039
0.036
0
7mer
1277-1293
0.005
0
6mer
2346-2362
0.003
0
6mer
433-446
0.002
0
TSIX
hsa-miR-128-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
686-704
0.023
0
8mer
32364-32381
0.011
0
7mer
28812-28830
0.011
8
7mer
20097-20120
0.010
1
8mer
3992-4008
0.006
0
6mer
36642-36659
0.004
2
8mer
2711-2724
0.004
0
7mer
24135-24161
0.003
1
6mer
31642-31656
0.002
5
6mer
34252-34271
0.002
1
6mer
27737-27742
0.002
1
6mer
29485-29494
0.002
5
6mer
25978-25998
0.002
3
6mer
33502-33523
0.002
1
6mer
22339-22357
0.002
1
8mer+wobble
522-540
0.001
Not Conserved
6mer
23489-23504
0.001
1
6mer
9082-9091
0.001
1
6mer
27427-27436
0.001
1
6mer
13905-13927
0.001
Not Conserved
6mer
8599-8611
0.001
0
6mer
20447-20466
0.001
0
6mer
11719-11732
0.001
Not Conserved
AC009948.5
hsa-miR-128-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415236
Biotype: antisense
Gene id: ENSG00000223960
Gene Name: AC009948.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
44-61
0.082
1
7mer
550-576
0.014
3
TUG1
hsa-miR-128-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000602971
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-111
0.089
8
6mer
1025-1035
0.004
2
6mer
744-766
0.002
0
AC009948.5
hsa-miR-128-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000436616
Biotype: antisense
Gene id: ENSG00000223960
Gene Name: AC009948.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
68-85
0.089
1
6mer
791-796
0.006
1
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