LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
LINC01441
hsa-miR-128-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000433766
Biotype: lincRNA
Gene id: ENSG00000224008
Gene Name: LINC01441
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2075-2089
0.041
2
8mer
228-239
0.015
0
6mer
1958-1978
0.004
1
RP11-323H21.3
hsa-miR-128-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000444708
Biotype: lincRNA
Gene id: ENSG00000236687
Gene Name: RP11-323H21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
119-138
0.032
1
8mer
359-377
0.027
1
EEF1E1-BLOC1S5
hsa-miR-128-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_037618.1
Biotype: sense
Gene id: NR_037618.1 (gene)
Gene Name: EEF1E1-BLOC1S5
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1043-1063
0.055
7
6mer
75-98
0.004
2
RP3-471M13.2
hsa-miR-128-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452366
Biotype: lincRNA
Gene id: ENSG00000224000
Gene Name: RP3-471M13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-300
0.038
1
8mer
398-416
0.012
0
8mer
376-393
0.009
Not Conserved
XLOC_012891
hsa-miR-128-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026572
Biotype: transcript isomorph
Gene id: XLOC_012891
Gene Name: XLOC_012891
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
363-377
0.048
1
6mer
61-77
0.005
1
6mer
228-251
0.005
0
RP11-223P11.3
hsa-miR-128-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000599979
Biotype: antisense
Gene id: ENSG00000223528
Gene Name: RP11-223P11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
241-266
0.059
2
C1orf132
hsa-miR-128-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6336-6354
0.010
6
7mer
1344-1364
0.009
3
8mer
8841-8854
0.008
1
7mer
1105-1115
0.004
1
7mer
12284-12302
0.004
2
8mer
3722-3733
0.003
1
6mer
4475-4493
0.003
7
8mer
10942-10955
0.003
0
6mer
8196-8218
0.002
2
7mer
4990-5010
0.002
1
6mer
5595-5620
0.002
1
7mer
4414-4433
0.002
0
6mer
13309-13328
0.002
2
6mer
14710-14731
0.002
1
6mer
12501-12518
0.001
1
6mer
3850-3871
0.001
0
6mer
3070-3085
0.001
0
6mer
8025-8043
0.001
1
6mer
11439-11450
0.001
Not Conserved
PWRN2
hsa-miR-128-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_026647.1
Biotype: lincRNA
Gene id: NR_026647.1 (gene)
Gene Name: PWRN2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1220-1235
0.027
1
8mer
853-873
0.013
0
8mer
1110-1131
0.008
1
6mer
2692-2717
0.003
1
6mer
5021-5040
0.003
0
6mer
4102-4119
0.003
0
7mer
2327-2341
0.001
Not Conserved
RP11-147C23.1
hsa-miR-128-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413825
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
722-741
0.058
2
RP11-95I16.6
hsa-miR-128-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000613871
Biotype: lincRNA
Gene id: ENSG00000278484
Gene Name: RP11-95I16.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-145
0.040
0
7mer
25-48
0.018
1
RP11-96A15.1
hsa-miR-128-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000619313
Biotype: lincRNA
Gene id: ENSG00000278464
Gene Name: RP11-96A15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-217
0.048
1
6mer
52-78
0.006
0
6mer
383-409
0.005
1
AC093627.7
hsa-miR-128-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000465755
Biotype: lincRNA
Gene id: ENSG00000232325
Gene Name: AC093627.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-39
0.052
1
6mer
603-617
0.006
0
XLOC_002094
hsa-miR-128-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005148
Biotype: transcript isomorph
Gene id: XLOC_002094
Gene Name: XLOC_002094
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
77-84
0.043
1
7mer
230-244
0.015
1
LINC01015
hsa-miR-128-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000445296
Biotype: antisense
Gene id: ENSG00000224582
Gene Name: LINC01015
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-307
0.058
1
HLA-F-AS1
hsa-miR-128-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000399247
Biotype: processed_transcript
Gene id: ENSG00000214922
Gene Name: HLA-F-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-252
0.034
1
8mer
381-401
0.012
0
6mer
200-222
0.005
1
6mer
278-292
0.004
0
6mer
1233-1257
0.003
0
RP11-787I22.3
hsa-miR-128-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605885
Biotype: antisense
Gene id: ENSG00000271730
Gene Name: RP11-787I22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
49-76
0.058
5
CTD-3064H18.4
hsa-miR-128-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000316807
Biotype: antisense
Gene id: ENSG00000180458
Gene Name: CTD-3064H18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2224-2244
0.021
1
7mer
985-1005
0.014
0
6mer
294-306
0.011
1
7mer
2988-3003
0.007
0
6mer
2724-2736
0.006
0
RP11-15I11.3
hsa-miR-128-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443448
Biotype: lincRNA
Gene id: ENSG00000226251
Gene Name: RP11-15I11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
299-313
0.058
2
XLOC_006016
hsa-miR-128-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013381
Biotype: transcript isomorph
Gene id: XLOC_006016
Gene Name: XLOC_006016
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2018-2041
0.048
0
6mer
1420-1443
0.004
4
7mer
1535-1547
0.004
Not Conserved
6mer
1106-1116
0.002
2
RP11-347P5.1
hsa-miR-128-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606818
Biotype: antisense
Gene id: ENSG00000272211
Gene Name: RP11-347P5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-172
0.034
0
9mer
553-574
0.023
0
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