LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_014389
hsa-miR-125b-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029706
Biotype: transcript isomorph
Gene id: XLOC_014389
Gene Name: XLOC_014389
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Kidney Normal/Primary
- Lymph Node Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
173-194
0.049
1
7mer
227-245
0.003
0
CTC-493L21.1
hsa-miR-125b-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506471
Biotype: lincRNA
Gene id: ENSG00000250544
Gene Name: CTC-493L21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1584-1591
0.038
0
7mer
689-707
0.014
1
AP001601.2
hsa-miR-125b-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000426771
Biotype: antisense
Gene id: ENSG00000223563
Gene Name: AP001601.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-325
0.045
2
8mer+mismatch
91-111
0.008
3
RP11-132A1.3
hsa-miR-125b-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000429254
Biotype: antisense
Gene id: ENSG00000232301
Gene Name: RP11-132A1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
671-689
0.052
0
RP13-221M14.2
hsa-miR-125b-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437631
Biotype: lincRNA
Gene id: ENSG00000233336
Gene Name: RP13-221M14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
329-354
0.033
1
7mer
190-202
0.013
Not Conserved
7mer
348-375
0.006
Not Conserved
AC024132.1
hsa-miR-125b-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000382007
Biotype: lincRNA
Gene id: ENSG00000205830
Gene Name: AC024132.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2257-2283
0.042
1
7mer
1458-1480
0.005
0
6mer
2162-2180
0.003
0
6mer
2140-2165
0.002
4
PSMD5-AS1
hsa-miR-125b-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000442982
Biotype: antisense
Gene id: ENSG00000226752
Gene Name: PSMD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1304-1327
0.033
1
7mer
1631-1652
0.019
0
AC007277.3
hsa-miR-125b-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428156
Biotype: antisense
Gene id: ENSG00000213981
Gene Name: AC007277.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2087-2106
0.049
3
6mer
1600-1614
0.003
1
AC003075.4
hsa-miR-125b-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436175
Biotype: antisense
Gene id: ENSG00000237773
Gene Name: AC003075.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-216
0.035
0
7mer
71-85
0.016
1
RP11-261P9.4
hsa-miR-125b-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000530479
Biotype: sense_intronic
Gene id: ENSG00000254419
Gene Name: RP11-261P9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
550-574
0.031
0
7mer
196-213
0.010
1
6mer
116-133
0.004
1
6mer
538-563
0.004
1
6mer
268-289
0.003
1
AC007966.1
hsa-miR-125b-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110217.1
Biotype: antisense
Gene id: NR_110217.1 (gene)
Gene Name: AC007966.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-801
0.051
0
AC007966.1
hsa-miR-125b-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000427269
Biotype: antisense
Gene id: ENSG00000226747
Gene Name: AC007966.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
445-463
0.051
0
RP11-8L2.1
hsa-miR-125b-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513489
Biotype: lincRNA
Gene id: ENSG00000250546
Gene Name: RP11-8L2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
32-47
0.045
3
6mer
219-245
0.003
1
6mer
344-368
0.003
3
XLOC_001126
hsa-miR-125b-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002543
Biotype: transcript isomorph
Gene id: XLOC_001126
Gene Name: XLOC_001126
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1519-1536
0.051
1
MIR497HG
hsa-miR-125b-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572453
Biotype: antisense
Gene id: ENSG00000267532
Gene Name: MIR497HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3570-3591
0.040
6
8mer
824-846
0.004
2
6mer
372-389
0.002
Not Conserved
6mer
965-980
0.002
3
6mer
1840-1860
0.001
1
6mer
2540-2557
0.001
0
7mer
2811-2829
0.001
Not Conserved
CTC-459F4.3
hsa-miR-125b-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585827
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
509-535
0.040
0
6mer
410-434
0.011
0
XLOC_011100
hsa-miR-125b-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022830
Biotype: transcript isomorph
Gene id: XLOC_011100
Gene Name: XLOC_011100
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6911-6932
0.029
1
7mer
7039-7057
0.008
1
7mer
5512-5536
0.006
1
8mer
3718-3738
0.003
Not Conserved
7mer
5492-5516
0.003
1
7mer
2593-2610
0.001
0
RP11-38M8.1
hsa-miR-125b-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609619
Biotype: lincRNA
Gene id: ENSG00000273297
Gene Name: RP11-38M8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
420-427
0.036
1
7mer
528-553
0.009
0
6mer
449-467
0.006
3
XLOC_012685
hsa-miR-125b-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026338
Biotype: transcript isomorph
Gene id: XLOC_012685
Gene Name: XLOC_012685
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1112-1123
0.026
1
7mer
1198-1209
0.014
1
7mer
686-701
0.011
0
RP11-538D16.3
hsa-miR-125b-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428646
Biotype: lincRNA
Gene id: ENSG00000225982
Gene Name: RP11-538D16.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
101-119
0.041
1
7mer
841-855
0.009
2
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