LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
RNASEH2B-AS1
hsa-miR-125b-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000593369
Biotype: antisense
Gene id: ENSG00000233672
Gene Name: RNASEH2B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
448-464
0.055
0
GMDS-AS1
hsa-miR-125b-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000505870
Biotype: lincRNA
Gene id: ENSG00000250903
Gene Name: GMDS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-93
0.047
2
6mer
310-321
0.004
3
6mer
5254-5273
0.002
1
6mer
2696-2712
0.001
1
6mer
6847-6863
0.001
1
6mer
1595-1621
0.001
Not Conserved
RP11-23N2.4
hsa-miR-125b-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562062
Biotype: antisense
Gene id: ENSG00000260618
Gene Name: RP11-23N2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-145
0.054
2
CTC-459F4.3
hsa-miR-125b-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588636
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
545-571
0.044
0
6mer
446-470
0.010
0
XLOC_003405
hsa-miR-125b-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006771
Biotype: transcript isomorph
Gene id: XLOC_003405
Gene Name: XLOC_003405
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2596-2621
0.008
0
8mer
3443-3468
0.004
Not Conserved
8mer
5327-5342
0.004
Not Conserved
8mer
6551-6566
0.004
Not Conserved
7mer
8411-8433
0.004
1
6mer
9670-9674
0.004
0
8mer
6362-6377
0.004
Not Conserved
8mer
4432-4457
0.003
Not Conserved
8mer
4148-4163
0.003
Not Conserved
8mer
3350-3375
0.003
Not Conserved
7mer
2927-2952
0.002
Not Conserved
6mer
627-643
0.002
0
6mer
9256-9279
0.001
0
6mer
2340-2357
0.001
0
6mer
1410-1426
0.001
Not Conserved
6mer
1268-1288
0.001
0
6mer
1221-1237
0.001
0
6mer
1363-1379
0.001
0
6mer
1693-1709
0.001
Not Conserved
FLJ16779
hsa-miR-125b-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000612722
Biotype: antisense
Gene id: ENSG00000275620
Gene Name: FLJ16779
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7535-7550
0.031
0
8mer
2200-2207
0.010
1
7mer
5800-5817
0.002
0
7mer
5545-5570
0.002
0
6mer
780-807
0.002
0
6mer
1288-1301
0.001
0
6mer
4035-4058
0.001
1
6mer
1048-1074
0.001
0
6mer
5086-5103
0.001
1
6mer
6182-6204
0.001
1
6mer
1387-1402
0.001
0
6mer
5815-5841
0.000
0
CTD-2201I18.1
hsa-miR-125b-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503007
Biotype: antisense
Gene id: ENSG00000249825
Gene Name: CTD-2201I18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
841-863
0.054
4
AC093390.1
hsa-miR-125b-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426976
Biotype: antisense
Gene id: ENSG00000232057
Gene Name: AC093390.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-240
0.023
1
8mer
2851-2863
0.014
2
7mer
124-146
0.006
0
6mer
45-68
0.003
1
7mer
757-773
0.003
1
6mer
2311-2331
0.002
1
6mer
2465-2489
0.002
1
6mer
804-827
0.001
1
XLOC_013543
hsa-miR-125b-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028193
Biotype: transcript isomorph
Gene id: XLOC_013543
Gene Name: XLOC_013543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3952-3971
0.010
1
7mer
3543-3568
0.005
0
6mer
231-247
0.005
1
6mer
429-454
0.003
1
6mer
3750-3776
0.002
0
6mer
576-601
0.002
1
7mer
1850-1874
0.002
Not Conserved
6mer
478-503
0.002
0
8mer
1902-1927
0.002
Not Conserved
6mer
626-650
0.002
0
6mer
671-696
0.002
1
6mer
3123-3139
0.001
Not Conserved
6mer
769-794
0.001
0
6mer
527-552
0.001
0
6mer
3235-3248
0.001
Not Conserved
6mer
1063-1088
0.001
0
6mer
818-843
0.001
0
6mer
2666-2685
0.001
Not Conserved
6mer
1112-1137
0.001
1
6mer
916-941
0.001
0
6mer
2464-2489
0.001
Not Conserved
6mer
1161-1186
0.001
0
6mer
1453-1480
0.001
0
6mer
2305-2330
0.001
Not Conserved
6mer
867-892
0.001
Not Conserved
6mer
1357-1382
0.001
0
6mer
1210-1235
0.001
0
6mer
1259-1284
0.001
0
6mer
1651-1676
0.000
Not Conserved
6mer
1951-1976
0.000
Not Conserved
6mer
1553-1578
0.000
Not Conserved
6mer
1504-1529
0.000
Not Conserved
6mer
1606-1627
0.000
Not Conserved
RP1-79C4.4
hsa-miR-125b-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606154
Biotype: lincRNA
Gene id: ENSG00000271811
Gene Name: RP1-79C4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
277-297
0.029
1
7mer
203-230
0.017
3
7mer
820-842
0.007
2
RP4-782L23.2
hsa-miR-125b-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443012
Biotype: antisense
Gene id: ENSG00000226883
Gene Name: RP4-782L23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
562-581
0.053
3
XLOC_011319
hsa-miR-125b-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023472
Biotype: transcript isomorph
Gene id: XLOC_011319
Gene Name: XLOC_011319
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
298-322
0.053
3
SOCS2-AS1
hsa-miR-125b-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547845
Biotype: retained_intron
Gene id: ENSG00000246985
Gene Name: SOCS2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-102
0.053
2
XLOC_008075
hsa-miR-125b-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016940
Biotype: transcript isomorph
Gene id: XLOC_008075
Gene Name: XLOC_008075
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
156-177
0.039
0
6mer
292-311
0.011
0
6mer
268-283
0.003
Not Conserved
XLOC_004452
hsa-miR-125b-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009253
Biotype: transcript isomorph
Gene id: XLOC_004452
Gene Name: XLOC_004452
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1584-1591
0.039
0
7mer
689-707
0.014
1
LINC01350
hsa-miR-125b-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436955
Biotype: lincRNA
Gene id: ENSG00000228309
Gene Name: LINC01350
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
547-564
0.053
1
MLIP-AS1
hsa-miR-125b-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434196
Biotype: antisense
Gene id: ENSG00000235050
Gene Name: MLIP-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
197-219
0.053
0
CTC-459F4.3
hsa-miR-125b-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592404
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
674-693
0.053
0
POU6F2-AS2
hsa-miR-125b-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000420243
Biotype: antisense
Gene id: ENSG00000233854
Gene Name: POU6F2-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
287-306
0.053
5
RP11-102K13.5
hsa-miR-125b-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000612156
Biotype: lincRNA
Gene id: ENSG00000278309
Gene Name: RP11-102K13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-228
0.020
0
8mer
279-303
0.005
0
7mer
5168-5185
0.003
1
7mer
5072-5087
0.003
1
8mer
4832-4850
0.002
0
6mer
3799-3813
0.002
5
7mer
1631-1650
0.002
1
8mer
5024-5039
0.002
Not Conserved
7mer
4892-4915
0.002
0
6mer
5775-5792
0.001
1
6mer
1998-2020
0.001
0
7mer
5097-5114
0.001
2
7mer
4389-4404
0.001
0
7mer
4928-4946
0.001
0
6mer
4140-4165
0.001
2
7mer
4904-4927
0.001
Not Conserved
7mer
4953-4970
0.001
0
7mer
4062-4088
0.001
1
7mer
4677-4698
0.001
0
6mer
5084-5102
0.001
0
6mer
5036-5053
0.001
0
8mer
1538-1559
0.001
0
6mer
4940-4958
0.000
0
6mer
4749-4766
0.000
Not Conserved
6mer
4123-4144
0.000
Not Conserved
6mer
4335-4358
0.000
Not Conserved
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