LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
RP11-757G1.6
hsa-miR-125b-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
649-668
0.036
0
6mer
3184-3189
0.015
0
6mer
1916-1920
0.006
0
6mer
704-719
0.001
Not Conserved
LOC100652736
hsa-miR-125b-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_103767.1
Biotype: lincRNA
Gene id: NR_103767.1 (gene)
Gene Name: LOC100652736
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
797-819
0.043
1
6mer
1065-1083
0.006
2
6mer
754-779
0.003
5
6mer
523-549
0.002
1
6mer
753-773
0.002
1
6mer
337-361
0.001
Not Conserved
RP11-386G11.10
hsa-miR-125b-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547387
Biotype: antisense
Gene id: ENSG00000258017
Gene Name: RP11-386G11.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
556-582
0.040
1
6mer
545-563
0.009
10
6mer
829-852
0.008
10
XLOC_004336
hsa-miR-125b-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009920
Biotype: transcript isomorph
Gene id: XLOC_004336
Gene Name: XLOC_004336
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-138
0.057
1
RP11-989E6.8
hsa-miR-125b-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568904
Biotype: lincRNA
Gene id: ENSG00000260921
Gene Name: RP11-989E6.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-151
0.057
0
RP11-108M9.3
hsa-miR-125b-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453554
Biotype: lincRNA
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-250
0.020
0
7mer
1137-1158
0.015
1
6mer
150-175
0.010
2
6mer
346-369
0.009
2
6mer
1152-1175
0.003
1
XLOC_012397
hsa-miR-125b-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025572
Biotype: transcript isomorph
Gene id: XLOC_012397
Gene Name: XLOC_012397
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1912-1936
0.022
0
7mer
608-634
0.012
2
7mer
548-564
0.011
1
7mer
61-84
0.008
0
6mer
1452-1478
0.003
1
RP11-710C12.1
hsa-miR-125b-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000605849
Biotype: antisense
Gene id: ENSG00000271474
Gene Name: RP11-710C12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3088-3095
0.042
4
7mer
1271-1280
0.008
1
7mer
1511-1537
0.003
1
6mer
405-422
0.003
0
AP003025.2
hsa-miR-125b-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000414466
Biotype: antisense
Gene id: ENSG00000237654
Gene Name: AP003025.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-346
0.023
2
8mer
3565-3583
0.014
2
7mer
591-615
0.011
2
6mer
1055-1059
0.006
8
6mer
1714-1737
0.001
1
6mer
1030-1034
0.001
0
GLIDR
hsa-miR-125b-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000305709
Biotype: lincRNA
Gene id: ENSG00000170161
Gene Name: GLIDR
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-60
0.021
0
7mer
157-182
0.015
0
7mer
815-842
0.006
0
6mer
2032-2048
0.005
0
7mer
618-638
0.004
Not Conserved
6mer
776-796
0.002
0
7mer
466-489
0.002
Not Conserved
XLOC_000346
hsa-miR-125b-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001103
Biotype: transcript isomorph
Gene id: XLOC_000346
Gene Name: XLOC_000346
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-61
0.028
7
8mer
269-275
0.028
2
SHANK3
hsa-miR-125b-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000445220
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3972-3996
0.023
11
7mer
1021-1042
0.014
10
7mer
4243-4270
0.013
11
7mer
1282-1306
0.004
5
6mer
916-928
0.002
Not Conserved
6mer
3857-3874
0.001
1
XLOC_009783
hsa-miR-125b-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020451
Biotype: transcript isomorph
Gene id: XLOC_009783
Gene Name: XLOC_009783
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-44
0.056
0
AC008079.10
hsa-miR-125b-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17804-17822
0.014
1
8mer
19788-19809
0.009
1
8mer
13221-13233
0.004
0
7mer
14894-14905
0.004
4
8mer
5407-5425
0.003
1
7mer
3862-3887
0.003
2
6mer
19517-19538
0.002
0
6mer
5901-5912
0.002
2
6mer
19975-19990
0.001
Not Conserved
6mer
15037-15056
0.001
1
6mer
19704-19719
0.001
1
6mer
8182-8209
0.001
1
6mer
4693-4715
0.001
1
6mer
2817-2821
0.001
1
6mer
7156-7172
0.001
0
6mer
963-976
0.001
1
6mer
1053-1073
0.001
1
6mer
808-826
0.001
1
6mer
6089-6106
0.001
0
6mer
2229-2234
0.001
0
6mer
5827-5852
0.001
0
RP11-120M18.2
hsa-miR-125b-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590353
Biotype: processed_transcript
Gene id: ENSG00000267009
Gene Name: RP11-120M18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
307-333
0.055
8
RP11-66D17.3
hsa-miR-125b-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441272
Biotype: lincRNA
Gene id: ENSG00000237588
Gene Name: RP11-66D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3679-3695
0.019
4
8mer
3765-3785
0.017
3
8mer
2834-2847
0.009
1
6mer
3996-4019
0.004
3
8mer
2628-2644
0.003
2
6mer
3904-3927
0.002
1
6mer
1629-1647
0.001
0
XLOC_001047
hsa-miR-125b-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000646
Biotype: transcript isomorph
Gene id: XLOC_001047
Gene Name: XLOC_001047
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3677-3693
0.019
4
8mer
3763-3783
0.017
3
8mer
2832-2845
0.009
1
6mer
3994-4017
0.004
3
8mer
2626-2642
0.003
2
6mer
3902-3925
0.002
1
6mer
1627-1645
0.001
0
RP11-128D14.1
hsa-miR-125b-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577835
Biotype: lincRNA
Gene id: ENSG00000265425
Gene Name: RP11-128D14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
632-653
0.055
2
LINC01350
hsa-miR-125b-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608417
Biotype: lincRNA
Gene id: ENSG00000228309
Gene Name: LINC01350
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
545-562
0.055
1
GS1-358P8.4
hsa-miR-125b-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000568479
Biotype: sense_overlapping
Gene id: ENSG00000260822
Gene Name: GS1-358P8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2523-2546
0.055
7
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